Gene detail information of Glyur000053s00006496.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G39940.1 | 5.00E-49 | RNI-like superfamily protein |
| NR | XP_007141797.1 | 3.92E-83 | hypothetical protein PHAVU_008G226500g [Phaseolus vulgaris] |
| Swissprot | tr|O04197|COI1_ARATH | 5.00E-57 | Coronatine-insensitive protein 1 |
| trEMBL | tr|I1M7X9|I1M7X9_SOYBN | 4.00E-84 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G06740.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00053 | 478692 | 479771 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.730 |
| SRR1783600 | control | 4.247 |
| SRR1783602 | moderate drought stress | 7.648 |
| SRR1811619 | moderate drought stress | 8.309 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.250 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.406 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.093 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.261 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.879 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.875 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.038 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.223 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 22.205 |
| SRR2868004 | Drought Stress(Tissue:root) | 29.145 |
| SRR2967015 | Control (Tissue:root) | 38.256 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.605 |
| SRR9715740 | Leave | 10.714 |
| SRR9715741 | Leave | 7.164 |
| SRR9715739 | Root | 15.879 |
| SRR9715742 | Root | 17.241 |
| SRR9715743 | Root | 12.989 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.300 |
| SRR8749028 | MeJA induced 9h | 1.106 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.055 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.442 |
| SRR8400027 | Control-Root | 16.374 |