Gene detail information of Glyur000054s00005309.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G04380.1 | 8.00E-94 | SET-domain containing protein lysine methyltransferase family protein |
| NR | XP_006604505.1 | 0 | PREDICTED: histone-lysine N-methyltransferase SUVR2-like isoform X1 [Glycine max] |
| COG | YP_001914923.1 | 8.00E-06 | nuclear protein SET [Xanthomonas oryzae pv. oryzae PXO99A] |
| Swissprot | tr|Q8W595|SUVR4_ARATH | 1.00E-108 | Histone-lysine N-methyltransferase SUVR4 |
| trEMBL | tr|K7MYR2|K7MYR2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G35120.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00054 | 53199 | 58866 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SET |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000054s00005309.1 | PF10440.4 | WIYLD | 4 | 61 | 2.50E-20 |
| Glyur000054s00005309.1 | PF05033.11 | Pre-SET | 411 | 557 | 4.90E-17 |
| Glyur000054s00005309.1 | PF00856.23 | SET | 597 | 660 | 8.80E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.185 |
| SRR1783600 | control | 7.232 |
| SRR1783602 | moderate drought stress | 5.063 |
| SRR1811619 | moderate drought stress | 5.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.695 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.553 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.136 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.997 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.292 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.320 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.003 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.963 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 19.081 |
| SRR2868004 | Drought Stress(Tissue:root) | 19.949 |
| SRR2967015 | Control (Tissue:root) | 19.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.235 |
| SRR9715740 | Leave | 4.248 |
| SRR9715741 | Leave | 6.207 |
| SRR9715739 | Root | 0.710 |
| SRR9715742 | Root | 5.887 |
| SRR9715743 | Root | 5.332 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.888 |
| SRR8749028 | MeJA induced 9h | 9.668 |
| SRR8749029 | MeJA induced 9h | 4.512 |
| SRR8749030 | Uninduced | 3.419 |
| SRR8749031 | Uninduced | 1.736 |
| SRR8749032 | Uninduced | 1.951 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 17.920 |
| SRR8400027 | Control-Root | 17.306 |