Gene detail information of Glyur000054s00005309.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G04380.18.00E-94SET-domain containing protein lysine methyltransferase family protein
NRXP_006604505.10PREDICTED: histone-lysine N-methyltransferase SUVR2-like isoform X1 [Glycine max]
COGYP_001914923.18.00E-06nuclear protein SET [Xanthomonas oryzae pv. oryzae PXO99A]
Swissprottr|Q8W595|SUVR4_ARATH1.00E-108Histone-lysine N-methyltransferase SUVR4
trEMBLtr|K7MYR2|K7MYR2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G35120.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000545319958866-


Gene family

Gene familysubfamily
Transcription Factors FamilySET


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0034968  histone lysine methylation


cellular_component

GO:0005634  nucleus


molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0018024  histone-lysine N-methyltransferase activity

"

Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000054s00005309.2PF10440.4WIYLD4612.70E-20
Glyur000054s00005309.2PF05033.11Pre-SET4115575.30E-17
Glyur000054s00005309.2PF00856.23SET5776983.90E-22


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.185
SRR1783600control7.232
SRR1783602moderate drought stress5.063
SRR1811619moderate drought stress5.089

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.695
DRR006520Root Summer glycyrrhizin high producing strain7.553
DRR006521Root Winter glycyrrhizin high producing strain4.136
DRR006522Root Winter glycyrrhizin high producing strain3.997
DRR006523Root Summer glycyrrhizin low producing strain7.292
DRR006524Root Summer glycyrrhizin low producing strain7.320
DRR006525Leaf Summer glycyrrhizin high producing strain3.003
DRR006526Leaf Summer glycyrrhizin high producing strain2.963

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)19.081
SRR2868004Drought Stress(Tissue:root)19.949
SRR2967015Control (Tissue:root)19.323

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.235
SRR9715740Leave4.248
SRR9715741Leave6.207
SRR9715739Root0.710
SRR9715742Root5.887
SRR9715743Root5.332

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.888
SRR8749028MeJA induced 9h9.668
SRR8749029MeJA induced 9h4.512
SRR8749030Uninduced3.419
SRR8749031Uninduced1.736
SRR8749032Uninduced1.951

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.920
SRR8400027Control-Root17.306

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved