Gene detail information of Glyur000054s00005316.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G33310.3 | 2.00E-26 | auxin-induced protein 13 |
| NR | NP_001242763.1 | 1.03E-62 | uncharacterized protein LOC100813788 precursor [Glycine max] |
| Swissprot | tr|Q38831|IAA13_ARATH | 7.00E-38 | Auxin-responsive protein IAA13 |
| trEMBL | tr|C6T8Q9|C6T8Q9_SOYBN | 4.00E-63 | Auxin-induced protein {ECO:0000256|RuleBase:RU004549} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00054 | 95733 | 97769 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AUX/IAA |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000054s00005316.1 | PF02309.11 | AUX_IAA | 72 | 202 | 1.30E-10 |
| Glyur000054s00005316.1 | PF02309.11 | AUX_IAA | 217 | 265 | 7.60E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.231 |
| SRR1783600 | control | 0.171 |
| SRR1783602 | moderate drought stress | 0.112 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.057 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.005 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.135 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.194 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.038 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.166 |
| SRR2967015 | Control (Tissue:root) | 1.263 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.020 |
| SRR8749028 | MeJA induced 9h | 0.027 |
| SRR8749029 | MeJA induced 9h | 0.160 |
| SRR8749030 | Uninduced | 0.007 |
| SRR8749031 | Uninduced | 0.186 |
| SRR8749032 | Uninduced | 0.223 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.990 |
| SRR8400027 | Control-Root | 2.546 |