Gene detail information of Glyur000054s00005321.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G20340.10Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
NRAES81615.20tyrosine/DOPA decarboxylase [Medicago truncatula]
COGYP_591235.17.00E-126aromatic-L-amino-acid decarboxylase [Candidatus Koribacter versatilis Ellin345]
Swissprottr|Q8RY79|TYDC1_ARATH0Tyrosine decarboxylase 1
trEMBLtr|G7KYF4|G7KYF4_MEDTR0Tyrosine/DOPA decarboxylase {ECO:0000313|EMBL:AES81615.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00054143894149510-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01592E4.1.1.25 EC:4.1.1.25 Tyrosine metabolism map00350
Isoquinoline alkaloid biosynthesismap00950


Gene Ontology

biological_process

GO:0006520  cellular amino acid metabolic process

GO:0019752  carboxylic acid metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0016831  carboxy-lyase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000054s00005321.1PF00282.14Pyridoxal_deC453042.40E-92
Glyur000054s00005321.1PF00282.14Pyridoxal_deC3083802.20E-25


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.056
SRR1783600control1.241
SRR1783602moderate drought stress1.170
SRR1811619moderate drought stress1.215

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.888
DRR006520Root Summer glycyrrhizin high producing strain0.913
DRR006521Root Winter glycyrrhizin high producing strain2.085
DRR006522Root Winter glycyrrhizin high producing strain1.666
DRR006523Root Summer glycyrrhizin low producing strain0.244
DRR006524Root Summer glycyrrhizin low producing strain0.283
DRR006525Leaf Summer glycyrrhizin high producing strain6.600
DRR006526Leaf Summer glycyrrhizin high producing strain5.667

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.971
SRR2868004Drought Stress(Tissue:root)5.271
SRR2967015Control (Tissue:root)5.374

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.690
SRR9715740Leave5.636
SRR9715741Leave4.883
SRR9715739Root1.063
SRR9715742Root1.486
SRR9715743Root1.362

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.860
SRR8749028MeJA induced 9h4.734
SRR8749029MeJA induced 9h5.734
SRR8749030Uninduced2.091
SRR8749031Uninduced4.947
SRR8749032Uninduced5.216

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.722
SRR8400027Control-Root2.076

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved