Gene detail information of Glyur000054s00005322.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G20340.10Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
NRAES81615.20tyrosine/DOPA decarboxylase [Medicago truncatula]
COGYP_591235.16.00E-166aromatic-L-amino-acid decarboxylase [Candidatus Koribacter versatilis Ellin345]
Swissprottr|Q7XHL3|TYDC1_ORYSJ0Tyrosine decarboxylase 1
trEMBLtr|G7KYF4|G7KYF4_MEDTR0Tyrosine/DOPA decarboxylase {ECO:0000313|EMBL:AES81615.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00054159628164956-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01592E4.1.1.25 EC:4.1.1.25 Tyrosine metabolism map00350
Isoquinoline alkaloid biosynthesismap00950


Gene Ontology

biological_process

GO:0006520  cellular amino acid metabolic process

GO:0019752  carboxylic acid metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0016831  carboxy-lyase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000054s00005322.1PF00282.14Pyridoxal_deC434164.00E-146


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.481
SRR1783600control2.423
SRR1783602moderate drought stress2.416
SRR1811619moderate drought stress2.388

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.605
DRR006520Root Summer glycyrrhizin high producing strain1.892
DRR006521Root Winter glycyrrhizin high producing strain3.858
DRR006522Root Winter glycyrrhizin high producing strain3.826
DRR006523Root Summer glycyrrhizin low producing strain0.638
DRR006524Root Summer glycyrrhizin low producing strain0.394
DRR006525Leaf Summer glycyrrhizin high producing strain9.216
DRR006526Leaf Summer glycyrrhizin high producing strain9.358

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.973
SRR2868004Drought Stress(Tissue:root)5.216
SRR2967015Control (Tissue:root)4.920

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.693
SRR9715740Leave18.040
SRR9715741Leave13.602
SRR9715739Root1.829
SRR9715742Root3.613
SRR9715743Root2.831

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.205
SRR8749028MeJA induced 9h3.956
SRR8749029MeJA induced 9h5.516
SRR8749030Uninduced2.216
SRR8749031Uninduced2.834
SRR8749032Uninduced2.804

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.420
SRR8400027Control-Root5.523

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved