Gene detail information of Glyur000054s00005324.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G20330.10Transducin/WD40 repeat-like superfamily protein
NRXP_003554306.20PREDICTED: WD repeat-containing protein 70-like [Glycine max]
COGYP_004050921.13.00E-21wd40 repeat, subgroup [Calditerrivibrio nitroreducens DSM 19672]
Swissprottr|Q8W1K8|MUT11_CHLRE5.00E-13Protein Mut11
trEMBLtr|I1N9W2|I1N9W2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G35280.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00054203955208737+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000054s00005324.1PF00400.27WD401491821.00E-06
Glyur000054s00005324.1PF00400.27WD402502843.20E-05
Glyur000054s00005324.1PF00400.27WD403063320.001
Glyur000054s00005324.1PF00400.27WD403443781.30E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control27.318
SRR1783600control27.208
SRR1783602moderate drought stress33.585
SRR1811619moderate drought stress33.145

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain31.243
DRR006520Root Summer glycyrrhizin high producing strain30.987
DRR006521Root Winter glycyrrhizin high producing strain91.508
DRR006522Root Winter glycyrrhizin high producing strain88.244
DRR006523Root Summer glycyrrhizin low producing strain27.715
DRR006524Root Summer glycyrrhizin low producing strain27.922
DRR006525Leaf Summer glycyrrhizin high producing strain17.272
DRR006526Leaf Summer glycyrrhizin high producing strain16.720

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.576
SRR2868004Drought Stress(Tissue:root)22.687
SRR2967015Control (Tissue:root)25.160

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.146
SRR9715740Leave16.874
SRR9715741Leave15.479
SRR9715739Root9.190
SRR9715742Root20.868
SRR9715743Root18.001

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h32.295
SRR8749028MeJA induced 9h30.338
SRR8749029MeJA induced 9h32.075
SRR8749030Uninduced23.407
SRR8749031Uninduced31.109
SRR8749032Uninduced24.812

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root35.173
SRR8400027Control-Root31.943

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved