Gene detail information of Glyur000054s00005330.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G43940.10GroES-like zinc-binding dehydrogenase family protein
NRXP_004493841.10PREDICTED: alcohol dehydrogenase class-3-like [Cicer arietinum]
COGYP_003147226.10S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [Kangiella koreensis DSM 16069]
Swissprottr|P80572|ADHX_PEA0Alcohol dehydrogenase class-3
trEMBLtr|G7KYI4|G7KYI4_MEDTR0Zn-dependent alcohol dehydrogenase family, class III protein {ECO:0000313|EMBL:AES81645.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00054229428232531-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00121frmA, ADH5, adhC EC:1.1.1.284 1.1.1.1 Carbon metabolism map01200
Degradation of aromatic compoundsmap01220
Glycolysis / Gluconeogenesismap00010
Methane metabolismmap00680
Fatty acid degradationmap00071
Tyrosine metabolismmap00350
Retinol metabolismmap00830
Chloroalkane and chloroalkene degradationmap00625
Naphthalene degradationmap00626
Metabolism of xenobiotics by cytochrome P450map00980
Drug metabolism - cytochrome P450map00982
Chemical carcinogenesismap05204


Gene Ontology

biological_process

GO:0006069  ethanol oxidation

GO:0055114  oxidation-reduction process


molecular_function

GO:0008270  zinc ion binding

GO:0016491  oxidoreductase activity

GO:0051903  S-(hydroxymethyl)glutathione dehydrogenase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000054s00005330.1PF08240.7ADH_N351622.60E-26
Glyur000054s00005330.1PF00107.21ADH_zinc_N2063313.40E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control113.979
SRR1783600control114.417
SRR1783602moderate drought stress104.939
SRR1811619moderate drought stress104.320

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain242.528
DRR006520Root Summer glycyrrhizin high producing strain240.883
DRR006521Root Winter glycyrrhizin high producing strain80.185
DRR006522Root Winter glycyrrhizin high producing strain76.288
DRR006523Root Summer glycyrrhizin low producing strain167.251
DRR006524Root Summer glycyrrhizin low producing strain167.295
DRR006525Leaf Summer glycyrrhizin high producing strain131.928
DRR006526Leaf Summer glycyrrhizin high producing strain130.667

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)227.485
SRR2868004Drought Stress(Tissue:root)193.663
SRR2967015Control (Tissue:root)192.145

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave160.491
SRR9715740Leave192.589
SRR9715741Leave165.794
SRR9715739Root249.561
SRR9715742Root190.751
SRR9715743Root201.448

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h141.574
SRR8749028MeJA induced 9h99.766
SRR8749029MeJA induced 9h142.331
SRR8749030Uninduced85.285
SRR8749031Uninduced54.482
SRR8749032Uninduced88.932

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root183.092
SRR8400027Control-Root182.547

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved