Gene detail information of Glyur000054s00005330.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT5G43940.1 | 0 | GroES-like zinc-binding dehydrogenase family protein |
NR | XP_004493841.1 | 0 | PREDICTED: alcohol dehydrogenase class-3-like [Cicer arietinum] |
COG | YP_003147226.1 | 0 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [Kangiella koreensis DSM 16069] |
Swissprot | tr|P80572|ADHX_PEA | 0 | Alcohol dehydrogenase class-3 |
trEMBL | tr|G7KYI4|G7KYI4_MEDTR | 0 | Zn-dependent alcohol dehydrogenase family, class III protein {ECO:0000313|EMBL:AES81645.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00054 | 229428 | 232531 | - |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000054s00005330.1 | PF08240.7 | ADH_N | 35 | 162 | 2.60E-26 |
Glyur000054s00005330.1 | PF00107.21 | ADH_zinc_N | 206 | 331 | 3.40E-23 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 113.979 |
SRR1783600 | control | 114.417 |
SRR1783602 | moderate drought stress | 104.939 |
SRR1811619 | moderate drought stress | 104.320 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 242.528 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 240.883 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 80.185 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 76.288 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 167.251 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 167.295 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 131.928 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 130.667 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 227.485 |
SRR2868004 | Drought Stress(Tissue:root) | 193.663 |
SRR2967015 | Control (Tissue:root) | 192.145 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 160.491 |
SRR9715740 | Leave | 192.589 |
SRR9715741 | Leave | 165.794 |
SRR9715739 | Root | 249.561 |
SRR9715742 | Root | 190.751 |
SRR9715743 | Root | 201.448 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 141.574 |
SRR8749028 | MeJA induced 9h | 99.766 |
SRR8749029 | MeJA induced 9h | 142.331 |
SRR8749030 | Uninduced | 85.285 |
SRR8749031 | Uninduced | 54.482 |
SRR8749032 | Uninduced | 88.932 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 183.092 |
SRR8400027 | Control-Root | 182.547 |