Gene detail information of Glyur000054s00005333.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G04140.1 | 0 | Transducin family protein / WD-40 repeat family protein |
| NR | XP_004493844.1 | 0 | PREDICTED: uncharacterized protein LOC101507891 [Cicer arietinum] |
| COG | YP_007092229.1 | 8.00E-18 | WD-40 repeat-containing protein [Chroococcidiopsis thermalis PCC 7203] |
| Swissprot | tr|Q8W1K8|MUT11_CHLRE | 5.00E-14 | Protein Mut11 |
| trEMBL | tr|I1N9X4|I1N9X4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G35370.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00054 | 251619 | 261140 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000054s00005333.1 | PF00400.27 | WD40 | 101 | 123 | 0.013 |
| Glyur000054s00005333.1 | PF00400.27 | WD40 | 127 | 166 | 1.30E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 34.511 |
| SRR1783600 | control | 35.703 |
| SRR1783602 | moderate drought stress | 47.357 |
| SRR1811619 | moderate drought stress | 46.584 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 33.993 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 32.877 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 63.106 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 60.987 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 39.600 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 40.486 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.327 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 35.657 |
| SRR2868004 | Drought Stress(Tissue:root) | 40.569 |
| SRR2967015 | Control (Tissue:root) | 44.322 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 21.189 |
| SRR9715740 | Leave | 19.540 |
| SRR9715741 | Leave | 27.242 |
| SRR9715739 | Root | 17.402 |
| SRR9715742 | Root | 36.554 |
| SRR9715743 | Root | 31.291 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.702 |
| SRR8749028 | MeJA induced 9h | 41.558 |
| SRR8749029 | MeJA induced 9h | 32.010 |
| SRR8749030 | Uninduced | 46.098 |
| SRR8749031 | Uninduced | 63.686 |
| SRR8749032 | Uninduced | 43.857 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 46.560 |
| SRR8400027 | Control-Root | 41.522 |