Gene detail information of Glyur000054s00005354.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G20180.1 | 9.00E-39 | phytochrome interacting factor 3-like 5 |
| NR | XP_004493862.1 | 0 | PREDICTED: transcription factor PIF1-like isoform X5 [Cicer arietinum] |
| Swissprot | tr|Q8GZM7|PIF1_ARATH | 1.00E-68 | Transcription factor PIF1 |
| trEMBL | tr|K7KFM1|K7KFM1_SOYBN | 2.00E-180 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G32747.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00054 | 451195 | 469376 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000054s00005354.1 | PF00010.21 | HLH | 216 | 262 | 2.20E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.606 |
| SRR1783600 | control | 10.775 |
| SRR1783602 | moderate drought stress | 28.780 |
| SRR1811619 | moderate drought stress | 28.471 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.591 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.432 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 33.839 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 32.690 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.597 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.376 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 91.697 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 91.212 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.187 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.018 |
| SRR2967015 | Control (Tissue:root) | 3.605 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 51.960 |
| SRR9715740 | Leave | 73.308 |
| SRR9715741 | Leave | 64.131 |
| SRR9715739 | Root | 1.709 |
| SRR9715742 | Root | 10.484 |
| SRR9715743 | Root | 7.485 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.803 |
| SRR8749028 | MeJA induced 9h | 0.159 |
| SRR8749029 | MeJA induced 9h | 0.953 |
| SRR8749030 | Uninduced | 2.919 |
| SRR8749031 | Uninduced | 3.767 |
| SRR8749032 | Uninduced | 4.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.858 |
| SRR8400027 | Control-Root | 11.273 |