Gene detail information of Glyur000055s00004527.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G49660.1 | 2.00E-144 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_003609656.1 | 0 | WD repeat-containing protein [Medicago truncatula] |
| COG | YP_001864889.1 | 5.00E-64 | hypothetical protein Npun_F1222 [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|Q8W1K8|MUT11_CHLRE | 4.00E-89 | Protein Mut11 |
| trEMBL | tr|G7JKD3|G7JKD3_MEDTR | 0 | Transducin/WD40 repeat protein {ECO:0000313|EMBL:AES91853.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00055 | 35970 | 38240 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000055s00004527.1 | PF00400.27 | WD40 | 20 | 53 | 1.80E-08 |
| Glyur000055s00004527.1 | PF00400.27 | WD40 | 71 | 107 | 2.50E-11 |
| Glyur000055s00004527.1 | PF00400.27 | WD40 | 112 | 149 | 6.20E-12 |
| Glyur000055s00004527.1 | PF00400.27 | WD40 | 153 | 191 | 2.70E-12 |
| Glyur000055s00004527.1 | PF00400.27 | WD40 | 203 | 234 | 6.00E-06 |
| Glyur000055s00004527.1 | PF00400.27 | WD40 | 238 | 279 | 0.00012 |
| Glyur000055s00004527.1 | PF00400.27 | WD40 | 284 | 322 | 8.00E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.729 |
| SRR1783600 | control | 28.124 |
| SRR1783602 | moderate drought stress | 31.508 |
| SRR1811619 | moderate drought stress | 31.812 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 27.235 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.035 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.878 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 28.786 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 32.462 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 32.093 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.756 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.659 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 26.772 |
| SRR2868004 | Drought Stress(Tissue:root) | 22.330 |
| SRR2967015 | Control (Tissue:root) | 24.728 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 16.760 |
| SRR9715740 | Leave | 23.735 |
| SRR9715741 | Leave | 20.804 |
| SRR9715739 | Root | 17.139 |
| SRR9715742 | Root | 22.465 |
| SRR9715743 | Root | 18.231 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.719 |
| SRR8749028 | MeJA induced 9h | 14.477 |
| SRR8749029 | MeJA induced 9h | 15.414 |
| SRR8749030 | Uninduced | 7.479 |
| SRR8749031 | Uninduced | 3.333 |
| SRR8749032 | Uninduced | 5.270 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 31.872 |
| SRR8400027 | Control-Root | 27.527 |