Gene detail information of Glyur000055s00004533.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G47810.1 | 8.00E-36 | nuclear factor Y, subunit B5 |
| NR | KHN26570.1 | 7.63E-68 | Nuclear transcription factor Y subunit B-5 [Glycine soja] |
| Swissprot | tr|O82248|NFYB5_ARATH | 1.00E-52 | Nuclear transcription factor Y subunit B-5 |
| trEMBL | tr|A0A072TR10|A0A072TR10_MEDTR | 8.00E-68 | Nuclear transcription factor Y protein {ECO:0000313|EMBL:KEH15995.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00055 | 70430 | 70840 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000055s00004533.1 | PF00808.18 | CBFD_NFYB_HMF | 22 | 86 | 6.80E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.463 |
| SRR1811619 | moderate drought stress | 0.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.977 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.305 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.818 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.038 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.226 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.226 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.884 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.031 |
| SRR2967015 | Control (Tissue:root) | 0.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.532 |
| SRR9715740 | Leave | 0.612 |
| SRR9715741 | Leave | 1.023 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.611 |
| SRR9715743 | Root | 0.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.282 |
| SRR8749028 | MeJA induced 9h | 0.999 |
| SRR8749029 | MeJA induced 9h | 0.356 |
| SRR8749030 | Uninduced | 0.760 |
| SRR8749031 | Uninduced | 0.477 |
| SRR8749032 | Uninduced | 0.848 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.823 |
| SRR8400027 | Control-Root | 0.945 |