Gene detail information of Glyur000055s00004534.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G02570.4 | 2.00E-38 | cullin 1 |
| NR | AFK41015.1 | 3.99E-101 | unknown [Lotus japonicus] |
| Swissprot | tr|Q94AH6|CUL1_ARATH | 4.00E-42 | Cullin-1 |
| trEMBL | tr|I3SL73|I3SL73_LOTJA | 1.00E-101 | Uncharacterized protein {ECO:0000313|EMBL:AFK41015.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00055 | 75224 | 78993 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | Cullin |
| Ubiquitin Family | SKP1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000055s00004534.2 | PF00888.17 | Cullin | 23 | 151 | 1.30E-20 |
| Glyur000055s00004534.2 | PF03931.10 | Skp1_POZ | 171 | 234 | 4.80E-13 |
| Glyur000055s00004534.2 | PF01466.14 | Skp1 | 250 | 316 | 2.50E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.569 |
| SRR1783600 | control | 0.447 |
| SRR1783602 | moderate drought stress | 0.583 |
| SRR1811619 | moderate drought stress | 0.500 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.292 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.298 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.267 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.171 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.804 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.727 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.117 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.004 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.215 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.335 |
| SRR2967015 | Control (Tissue:root) | 0.502 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.296 |
| SRR9715740 | Leave | 0.939 |
| SRR9715741 | Leave | 2.238 |
| SRR9715739 | Root | 0.143 |
| SRR9715742 | Root | 0.445 |
| SRR9715743 | Root | 0.465 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.033 |
| SRR8749028 | MeJA induced 9h | 0.694 |
| SRR8749029 | MeJA induced 9h | 0.167 |
| SRR8749030 | Uninduced | 0.533 |
| SRR8749031 | Uninduced | 0.888 |
| SRR8749032 | Uninduced | 0.417 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.066 |
| SRR8400027 | Control-Root | 0.760 |