Gene detail information of Glyur000055s00004540.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G21430.20DNA binding
NRXP_003550195.10PREDICTED: protein ALWAYS EARLY 3-like isoform X1 [Glycine max]
Swissprottr|Q6A332|ALY3_ARATH0Protein ALWAYS EARLY 3
trEMBLtr|K7L3R0|K7L3R0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G37961.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00055112346128554-


Gene family

Gene familysubfamily
Transcription Factors FamilyMYB-related


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006351  transcription, DNA-templated

GO:0007049  cell cycle


cellular_component

GO:0017053  transcriptional repressor complex


molecular_function

GO:0003677  DNA binding

GO:0003682  chromatin binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000055s00004540.1PF00249.26Myb_DNA-binding1031381.10E-05
Glyur000055s00004540.1PF06584.8DIRP6887894.30E-33


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.714
SRR1783600control6.720
SRR1783602moderate drought stress9.979
SRR1811619moderate drought stress9.938

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.615
DRR006520Root Summer glycyrrhizin high producing strain8.585
DRR006521Root Winter glycyrrhizin high producing strain17.914
DRR006522Root Winter glycyrrhizin high producing strain17.342
DRR006523Root Summer glycyrrhizin low producing strain6.094
DRR006524Root Summer glycyrrhizin low producing strain5.998
DRR006525Leaf Summer glycyrrhizin high producing strain7.395
DRR006526Leaf Summer glycyrrhizin high producing strain7.462

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.547
SRR2868004Drought Stress(Tissue:root)15.274
SRR2967015Control (Tissue:root)14.551

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.230
SRR9715740Leave5.213
SRR9715741Leave5.520
SRR9715739Root0.810
SRR9715742Root5.211
SRR9715743Root4.726

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.360
SRR8749028MeJA induced 9h16.569
SRR8749029MeJA induced 9h6.847
SRR8749030Uninduced9.509
SRR8749031Uninduced9.127
SRR8749032Uninduced5.904

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.043
SRR8400027Control-Root11.176

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved