Gene detail information of Glyur000055s00004545.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G47850.34.00E-109Zinc finger C-x8-C-x5-C-x3-H type family protein
NRXP_003550189.10PREDICTED: zinc finger CCCH domain-containing protein 58-like [Glycine max]
Swissprottr|Q84W91|C3H32_ARATH3.00E-151Zinc finger CCCH domain-containing protein 32
trEMBLtr|K7MJK6|K7MJK6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G02720.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00055153947157505+


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000055s00004545.1PF00642.19zf-CCCH69949.40E-10
Glyur000055s00004545.1PF00642.19zf-CCCH1151391.50E-08
Glyur000055s00004545.1PF00642.19zf-CCCH1611857.80E-09
Glyur000055s00004545.1PF00642.19zf-CCCH3233486.60E-10
Glyur000055s00004545.1PF00642.19zf-CCCH3864092.20E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control20.243
SRR1783600control20.419
SRR1783602moderate drought stress19.885
SRR1811619moderate drought stress20.028

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.383
DRR006520Root Summer glycyrrhizin high producing strain8.799
DRR006521Root Winter glycyrrhizin high producing strain6.335
DRR006522Root Winter glycyrrhizin high producing strain6.697
DRR006523Root Summer glycyrrhizin low producing strain13.448
DRR006524Root Summer glycyrrhizin low producing strain13.091
DRR006525Leaf Summer glycyrrhizin high producing strain10.410
DRR006526Leaf Summer glycyrrhizin high producing strain10.093

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.657
SRR2868004Drought Stress(Tissue:root)16.250
SRR2967015Control (Tissue:root)16.297

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.433
SRR9715740Leave6.074
SRR9715741Leave6.543
SRR9715739Root7.796
SRR9715742Root12.042
SRR9715743Root10.162

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h18.626
SRR8749028MeJA induced 9h23.965
SRR8749029MeJA induced 9h14.418
SRR8749030Uninduced6.455
SRR8749031Uninduced4.418
SRR8749032Uninduced4.509

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.316
SRR8400027Control-Root15.339

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved