Gene detail information of Glyur000055s00004546.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G18560.1 | 5.00E-43 | Integrase-type DNA-binding superfamily protein |
| NR | XP_007154243.1 | 1.70E-148 | hypothetical protein PHAVU_003G102500g [Phaseolus vulgaris] |
| Swissprot | tr|Q6J9Q2|ERF86_ARATH | 9.00E-57 | Ethylene-responsive transcription factor ERF086 |
| trEMBL | tr|V7C7U9|V7C7U9_PHAVU | 6.00E-149 | Uncharacterized protein {ECO:0000313|EMBL:ESW26237.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00055 | 160275 | 161411 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ERF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000055s00004546.1 | PF00847.15 | AP2 | 51 | 99 | 3.60E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.230 |
| SRR1783600 | control | 1.145 |
| SRR1783602 | moderate drought stress | 0.311 |
| SRR1811619 | moderate drought stress | 0.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.673 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.064 |
| SRR2967015 | Control (Tissue:root) | 0.678 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.828 |
| SRR9715742 | Root | 0.407 |
| SRR9715743 | Root | 0.269 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.248 |
| SRR8749028 | MeJA induced 9h | 0.156 |
| SRR8749029 | MeJA induced 9h | 0.190 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.378 |
| SRR8400027 | Control-Root | 0.979 |