Gene detail information of Glyur000055s00004560.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G18650.11.00E-134CHY-type/CTCHY-type/RING-type Zinc finger protein
NRNP_001241502.10uncharacterized protein LOC100792038 [Glycine max]
trEMBLtr|C6TLW1|C6TLW1_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G38070.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00055247536250895+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10144RCHY1, PIRH2 EC:2.3.2.27 Ubiquitin mediated proteolysis map04120
p53 signaling pathwaymap04115
Measlesmap05162


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000055s00004560.1PF05495.7zf-CHY181002.40E-18
Glyur000055s00004560.1PF13923.1zf-C3HC4_21531953.20E-07
Glyur000055s00004560.1PF14599.1zinc_ribbon_61992583.00E-30


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control20.103
SRR1783600control20.075
SRR1783602moderate drought stress25.477
SRR1811619moderate drought stress25.175

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain22.524
DRR006520Root Summer glycyrrhizin high producing strain22.348
DRR006521Root Winter glycyrrhizin high producing strain6.838
DRR006522Root Winter glycyrrhizin high producing strain6.531
DRR006523Root Summer glycyrrhizin low producing strain23.431
DRR006524Root Summer glycyrrhizin low producing strain23.008
DRR006525Leaf Summer glycyrrhizin high producing strain4.804
DRR006526Leaf Summer glycyrrhizin high producing strain4.700

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)25.575
SRR2868004Drought Stress(Tissue:root)28.066
SRR2967015Control (Tissue:root)32.921

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.946
SRR9715740Leave12.832
SRR9715741Leave7.102
SRR9715739Root9.023
SRR9715742Root10.753
SRR9715743Root9.918

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.237
SRR8749028MeJA induced 9h17.286
SRR8749029MeJA induced 9h16.536
SRR8749030Uninduced14.820
SRR8749031Uninduced7.399
SRR8749032Uninduced11.362

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root29.313
SRR8400027Control-Root26.177

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved