Gene detail information of Glyur000055s00004575.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G28290.20P-loop containing nucleoside triphosphate hydrolases superfamily protein
NRKHN03396.10Chromatin structure-remodeling complex subunit snf21, partial [Glycine soja]
COGYP_633501.11.00E-70SNF2/helicase domain-containing protein [Myxococcus xanthus DK 1622]
Swissprottr|F4IHS2|SYD_ARATH0Chromatin structure-remodeling complex protein SYD
trEMBLtr|K7MJJ7|K7MJJ7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G02540.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00055331963351734+


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0005524  ATP binding

GO:0016818  hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

GO:0042393  histone binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000055s00004575.1PF00176.18SNF2_N105713484.80E-75
Glyur000055s00004575.1PF14619.1SnAC159316713.70E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control22.944
SRR1783600control22.974
SRR1783602moderate drought stress31.955
SRR1811619moderate drought stress31.728

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.326
DRR006520Root Summer glycyrrhizin high producing strain14.073
DRR006521Root Winter glycyrrhizin high producing strain13.774
DRR006522Root Winter glycyrrhizin high producing strain13.395
DRR006523Root Summer glycyrrhizin low producing strain17.660
DRR006524Root Summer glycyrrhizin low producing strain17.605
DRR006525Leaf Summer glycyrrhizin high producing strain9.027
DRR006526Leaf Summer glycyrrhizin high producing strain9.012

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)39.518
SRR2868004Drought Stress(Tissue:root)47.287
SRR2967015Control (Tissue:root)50.683

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.454
SRR9715740Leave18.083
SRR9715741Leave20.607
SRR9715739Root3.888
SRR9715742Root29.505
SRR9715743Root25.740

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.391
SRR8749028MeJA induced 9h26.052
SRR8749029MeJA induced 9h14.704
SRR8749030Uninduced17.699
SRR8749031Uninduced16.573
SRR8749032Uninduced13.881

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root34.686
SRR8400027Control-Root37.075

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved