Gene detail information of Glyur000055s00004581.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G15560.10Deoxyxylulose-5-phosphate synthase
NRAAQ84169.101-deoxy-D-xylulose 5-phosphate synthase [Pueraria montana var. lobata]
COGYP_002289642.101-deoxy-D-xylulose-5-phosphate synthase [Oligotropha carboxidovorans OM5]
Swissprottr|O78328|DXS_CAPAN0Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic (Precursor)
trEMBLtr|Q6EJC9|Q6EJC9_PUEML01-deoxy-D-xylulose 5-phosphate synthase {ECO:0000313|EMBL:AAQ84169.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00055370661374634-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01662dxs EC:2.2.1.7 Thiamine metabolism map00730
Terpenoid backbone biosynthesismap00900


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0016114  terpenoid biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0008661  1-deoxy-D-xylulose-5-phosphate synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000055s00004581.1PF13292.1DXP_synthase_N741961.50E-60
Glyur000055s00004581.1PF13292.1DXP_synthase_N2223874.40E-42
Glyur000055s00004581.1PF02779.19Transket_pyr4245851.20E-43
Glyur000055s00004581.1PF02780.15Transketolase_C6037266.50E-31


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.743
SRR1783600control10.717
SRR1783602moderate drought stress13.070
SRR1811619moderate drought stress12.918

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.548
DRR006520Root Summer glycyrrhizin high producing strain12.292
DRR006521Root Winter glycyrrhizin high producing strain3.666
DRR006522Root Winter glycyrrhizin high producing strain3.329
DRR006523Root Summer glycyrrhizin low producing strain11.719
DRR006524Root Summer glycyrrhizin low producing strain11.669
DRR006525Leaf Summer glycyrrhizin high producing strain31.081
DRR006526Leaf Summer glycyrrhizin high producing strain30.851

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)37.009
SRR2868004Drought Stress(Tissue:root)54.775
SRR2967015Control (Tissue:root)34.604

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave25.327
SRR9715740Leave15.543
SRR9715741Leave16.569
SRR9715739Root11.915
SRR9715742Root18.643
SRR9715743Root16.562

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h32.900
SRR8749028MeJA induced 9h55.581
SRR8749029MeJA induced 9h21.901
SRR8749030Uninduced4.171
SRR8749031Uninduced1.077
SRR8749032Uninduced1.601

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root36.118
SRR8400027Control-Root24.273

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved