Gene detail information of Glyur000056s00004106.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G61050.1 | 6.00E-95 | alpha 1,4-glycosyltransferase family protein |
| NR | XP_003593549.1 | 0 | Lactosylceramide 4-alpha-galactosyltransferase [Medicago truncatula] |
| Swissprot | tr|P0C8Q4|Y4990_ARATH | 5.00E-37 | Uncharacterized protein At4g19900 |
| trEMBL | tr|G7IPQ5|G7IPQ5_MEDTR | 0 | Lactosylceramide 4-alpha-galactosyltransferase-like protein {ECO:0000313|EMBL:AES63800.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00056 | 46691 | 48061 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT32 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01988 | A4GALT | EC:2.4.1.228 | Glycosphingolipid biosynthesis - lacto and neolacto series | map00601 |
| Glycosphingolipid biosynthesis - globo and isoglobo series | map00603 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000056s00004106.1 | PF04488.10 | Gly_transf_sug | 188 | 310 | 1.40E-23 |
| Glyur000056s00004106.1 | PF04572.7 | Gb3_synth | 326 | 455 | 4.50E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.286 |
| SRR1783600 | control | 1.307 |
| SRR1783602 | moderate drought stress | 0.918 |
| SRR1811619 | moderate drought stress | 0.904 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.840 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.973 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.081 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.079 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.409 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.397 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.258 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.424 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.192 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.583 |
| SRR2967015 | Control (Tissue:root) | 0.595 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.978 |
| SRR9715740 | Leave | 0.515 |
| SRR9715741 | Leave | 0.382 |
| SRR9715739 | Root | 0.553 |
| SRR9715742 | Root | 0.478 |
| SRR9715743 | Root | 0.208 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.408 |
| SRR8749028 | MeJA induced 9h | 0.614 |
| SRR8749029 | MeJA induced 9h | 0.092 |
| SRR8749030 | Uninduced | 0.074 |
| SRR8749031 | Uninduced | 0.112 |
| SRR8749032 | Uninduced | 0.040 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.424 |
| SRR8400027 | Control-Root | 1.219 |