Gene detail information of Glyur000056s00004125.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G47160.1 | 2.00E-88 | RING/U-box superfamily protein |
| NR | NP_001241918.1 | 2.47E-172 | uncharacterized protein LOC100789769 [Glycine max] |
| trEMBL | tr|K7MA46|K7MA46_SOYBN | 6.00E-175 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G07890.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00056 | 139593 | 143475 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000056s00004125.1 | PF13920.1 | zf-C3HC4_3 | 149 | 195 | 1.60E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.029 |
| SRR1783600 | control | 27.338 |
| SRR1783602 | moderate drought stress | 26.544 |
| SRR1811619 | moderate drought stress | 26.245 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 32.471 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 32.657 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.837 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.664 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.862 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.707 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.454 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.469 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 28.862 |
| SRR2868004 | Drought Stress(Tissue:root) | 55.863 |
| SRR2967015 | Control (Tissue:root) | 62.301 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 19.076 |
| SRR9715740 | Leave | 30.821 |
| SRR9715741 | Leave | 24.477 |
| SRR9715739 | Root | 5.677 |
| SRR9715742 | Root | 10.475 |
| SRR9715743 | Root | 7.784 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 49.393 |
| SRR8749028 | MeJA induced 9h | 116.284 |
| SRR8749029 | MeJA induced 9h | 52.384 |
| SRR8749030 | Uninduced | 27.994 |
| SRR8749031 | Uninduced | 54.273 |
| SRR8749032 | Uninduced | 55.101 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 44.726 |
| SRR8400027 | Control-Root | 32.092 |