Gene detail information of Glyur000056s00004126.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G04930.18.00E-156fatty acid desaturase family protein
NRXP_004485750.10PREDICTED: sphingolipid delta(4)-desaturase DES1-like [Cicer arietinum]
COGYP_003389759.18.00E-85fatty acid desaturase [Spirosoma linguale DSM 74]
Swissprottr|Q6H5U3|DES1L_ORYSJ0Sphingolipid delta(4)-desaturase DES1-like
trEMBLtr|I3SQJ0|I3SQJ0_LOTJA0Uncharacterized protein {ECO:0000313|EMBL:AFK42532.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00056144864147380+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04712DEGS EC:1.14.-.- Sphingolipid metabolism map00600
Sphingolipid signaling pathwaymap04071


Gene Ontology

biological_process

GO:0006629  lipid metabolic process

GO:0030148  sphingolipid biosynthetic process


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0042284  sphingolipid delta-4 desaturase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000056s00004126.1PF08557.5Lipid_DES28641.40E-20
Glyur000056s00004126.1PF00487.19FA_desaturase923053.50E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.543
SRR1783600control7.667
SRR1783602moderate drought stress3.897
SRR1811619moderate drought stress3.917

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.680
DRR006520Root Summer glycyrrhizin high producing strain8.673
DRR006521Root Winter glycyrrhizin high producing strain0.430
DRR006522Root Winter glycyrrhizin high producing strain0.407
DRR006523Root Summer glycyrrhizin low producing strain3.781
DRR006524Root Summer glycyrrhizin low producing strain3.580
DRR006525Leaf Summer glycyrrhizin high producing strain11.840
DRR006526Leaf Summer glycyrrhizin high producing strain11.621

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.524
SRR2868004Drought Stress(Tissue:root)6.418
SRR2967015Control (Tissue:root)6.146

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.373
SRR9715740Leave2.758
SRR9715741Leave2.255
SRR9715739Root3.388
SRR9715742Root2.794
SRR9715743Root2.196

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h19.299
SRR8749028MeJA induced 9h9.054
SRR8749029MeJA induced 9h8.490
SRR8749030Uninduced2.708
SRR8749031Uninduced2.388
SRR8749032Uninduced2.930

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root4.770
SRR8400027Control-Root7.210

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved