Gene detail information of Glyur000056s00004128.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G04955.10allantoinase
NRAAR29343.10allantoinase [Robinia pseudoacacia]
COGYP_271506.14.00E-123allantoinase [Colwellia psychrerythraea 34H]
Swissprottr|Q94AP0|ALN_ARATH0Allantoinase
trEMBLtr|Q6S4R9|Q6S4R9_ROBPS0Allantoinase {ECO:0000313|EMBL:AAR29343.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00056153747160768+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01466allB EC:3.5.2.5 Purine metabolism map00230


Gene Ontology

biological_process

GO:0000256  allantoin catabolic process


molecular_function

GO:0004038  allantoinase activity

GO:0008270  zinc ion binding

GO:0016787  hydrolase activity

GO:0016810  hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

GO:0050897  cobalt ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000056s00004128.1PF01979.15Amidohydro_11024521.30E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control49.334
SRR1783600control50.167
SRR1783602moderate drought stress69.772
SRR1811619moderate drought stress69.011

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain40.834
DRR006520Root Summer glycyrrhizin high producing strain40.690
DRR006521Root Winter glycyrrhizin high producing strain34.819
DRR006522Root Winter glycyrrhizin high producing strain34.119
DRR006523Root Summer glycyrrhizin low producing strain49.669
DRR006524Root Summer glycyrrhizin low producing strain49.417
DRR006525Leaf Summer glycyrrhizin high producing strain20.379
DRR006526Leaf Summer glycyrrhizin high producing strain20.080

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)59.358
SRR2868004Drought Stress(Tissue:root)67.508
SRR2967015Control (Tissue:root)57.993

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave26.555
SRR9715740Leave27.603
SRR9715741Leave28.697
SRR9715739Root38.961
SRR9715742Root43.037
SRR9715743Root39.529

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h37.955
SRR8749028MeJA induced 9h74.132
SRR8749029MeJA induced 9h42.684
SRR8749030Uninduced72.465
SRR8749031Uninduced67.427
SRR8749032Uninduced47.432

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root73.684
SRR8400027Control-Root67.778

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved