Gene detail information of Glyur000056s00004138.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G27470.13.00E-39RING membrane-anchor 3
NRXP_003545948.12.65E-121PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like isoform X1 [Glycine max]
Swissprottr|Q6R567|RMA1_CAPAN6.00E-64E3 ubiquitin-protein ligase RMA1H1
trEMBLtr|K7MA52|K7MA52_SOYBN1.00E-121Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G07990.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00056197825198529-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10666RNF5 EC:2.3.2.27 Protein processing in endoplasmic reticulum map04141


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000056s00004138.1PF13923.1zf-C3HC4_230763.90E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control39.649
SRR1783600control39.878
SRR1783602moderate drought stress30.253
SRR1811619moderate drought stress30.384

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain30.429
DRR006520Root Summer glycyrrhizin high producing strain30.622
DRR006521Root Winter glycyrrhizin high producing strain16.552
DRR006522Root Winter glycyrrhizin high producing strain15.922
DRR006523Root Summer glycyrrhizin low producing strain21.976
DRR006524Root Summer glycyrrhizin low producing strain21.821
DRR006525Leaf Summer glycyrrhizin high producing strain18.073
DRR006526Leaf Summer glycyrrhizin high producing strain17.445

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.113
SRR2868004Drought Stress(Tissue:root)19.465
SRR2967015Control (Tissue:root)16.673

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave25.534
SRR9715740Leave20.402
SRR9715741Leave24.447
SRR9715739Root27.693
SRR9715742Root30.092
SRR9715743Root27.742

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h25.284
SRR8749028MeJA induced 9h25.224
SRR8749029MeJA induced 9h15.642
SRR8749030Uninduced16.668
SRR8749031Uninduced11.439
SRR8749032Uninduced11.411

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root25.031
SRR8400027Control-Root25.294

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved