Gene detail

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Gene detail information of Glyur000056s00004139.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G22620.2	8.00E-38	phosphoglycerate/bisphosphoglycerate mutase family protein
NR	XP_003543048.1	9.42E-136	PREDICTED: probable phosphoglycerate mutase-like [Glycine max]
COG	NP_923717.1	2.00E-34	phosphoglycerate mutase [Gloeobacter violaceus PCC 7421]
Swissprot	tr\|Q9FNJ9\|CA1P_ARATH	7.00E-43	Probable 2-carboxy-D-arabinitol-1-phosphatase {ECO:0000305} (Precursor)
trEMBL	tr\|I1M244\|I1M244_SOYBN	4.00E-136	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G31320.1}

Sequence

Transcript Sequence

>Glyur000056s00004139.1
ATGGTTTGCGAAACAGTACCCACAACCGCAGCCACAGGCCACAGCCACAACACGCTTTCAAGGCGACCTGCCCTTCGGCTTCGGGTTCCTTCACATGCTCCTCTTCCTCTCTGCATTCACTGCTCAACTTCTACTTCAGAGGCTGCCCCAGAGAAACTTCCAACCAGTACTGATTTTTCTGTAACTGGTGGTGCATATGATTTCGCGAAAGCAACAATATCACTAACAAACGAGTTAATCTCTTCATCAAAGAAAGTGATTCTTATAAGGCATGGTCTTAGCACTTGGAATGCAGAAAGTAGGATTCAGGGAAGCTCGGATTTGTCTGTACTAACTGAAGCTGGGGTGGAACAAGCAGAGAGGTGCAAGAAAGCCTTGGAAAATATTTACTTTGACCAATGTTTTGCCAGTCCGATATCTCGTGCCAAGGCAGTGGATGCTAANAAAACATATCCCAAGGAGTATACAACTTGGAGGGAAGATCCGGCCAATTTTTGCATGGATGGAAGATATCCTGTACGAGATCTCTGGAAAGCTGCAAGAGATTGTTGGAAGGAAATTTTGTTGTCACCTGGAGAAAGCTTTCTGGTCGTGACTCACAAATCAATATTGAGGGCATTAACTTGCACTGCTTTAGGCCTGGGCCCAGAGAGGTTTCGTTCCCTTGATATCAACAATGGTGGAATATGTGTATTCAACTTCAACACCAAAGGAGAAGCAATGCTTGAAGCTTTAAATATGACGGCTCACATGTACAGTGATCATGTCTATCCTGGCTGAAATTTCTTGGTCGTTACNGCAAACTAATGCAAGGAAGACAACAACTATCATTTCTATTATAGNATGAAATATACCATGGAACAACATCACTATGTACTTGATGTGGGATTTTTCATTTTAATCATTTGAACTTCCGAACCATGGCAGGTAGATCCAACAATGAAGCATCTTTATCAATGCTTTTGTAGCAAGGGGGATTTTGACTCAGCCGATTGAAAAAACAAGTGAAATGGCAACCCCTTTCCCTTTTATATAAATAGAGATGTGGAGGAATTATAAGTATATTGATTCTGTTGTTTTTGCAAATTAATTATGTGAATTCCAACGCTTAGTGTACCAAGTCTATTCAATGTCCTCATTTTTTTTTTGAAATATTGTTTCATCTCATGCAAATCTAGCAAACTGTAGGAGTTTTTTTTGTTGGGAATCCAAGTGAGTGTAAAGAGAGTCAAGTCCCACGTTGGGGAAAGAGCTAAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00056	204044	207315	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15637	PGAM5	EC:3.1.3.16	TNF signaling pathway	map04668

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000056s00004139.1	PF00300.17	His_Phos_1	85	143	1.60E-13
Glyur000056s00004139.1	PF00300.17	His_Phos_1	147	207	4.30E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.369
SRR1783600	control	0.343
SRR1783602	moderate drought stress	1.505
SRR1811619	moderate drought stress	1.555

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.490
DRR006520	Root Summer glycyrrhizin high producing strain	2.683
DRR006521	Root Winter glycyrrhizin high producing strain	0.361
DRR006522	Root Winter glycyrrhizin high producing strain	0.431
DRR006523	Root Summer glycyrrhizin low producing strain	2.961
DRR006524	Root Summer glycyrrhizin low producing strain	2.832
DRR006525	Leaf Summer glycyrrhizin high producing strain	40.476
DRR006526	Leaf Summer glycyrrhizin high producing strain	39.409

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	4.292
SRR2868004	Drought Stress(Tissue:root)	4.800
SRR2967015	Control (Tissue:root)	4.511

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	46.132
SRR9715740	Leave	66.542
SRR9715741	Leave	38.604
SRR9715739	Root	1.325
SRR9715742	Root	2.098
SRR9715743	Root	3.130

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.302
SRR8749028	MeJA induced 9h	7.254
SRR8749029	MeJA induced 9h	5.400
SRR8749030	Uninduced	8.454
SRR8749031	Uninduced	1.245
SRR8749032	Uninduced	2.134

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	3.020
SRR8400027	Control-Root	3.661