Gene detail information of Glyur000056s00004143.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G33770.1 | 0 | phosphate 2 |
| NR | XP_004485781.1 | 0 | PREDICTED: probable ubiquitin-conjugating enzyme E2 24-like [Cicer arietinum] |
| Swissprot | tr|Q8VY10|UBC24_ARATH | 0 | Probable ubiquitin-conjugating enzyme E2 24 |
| trEMBL | tr|I1M241|I1M241_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G31290.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00056 | 221091 | 227390 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | UBC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10581 | UBE2O | EC:2.3.2.24 | Ubiquitin mediated proteolysis | map04120 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000056s00004143.2 | PF00179.21 | UQ_con | 688 | 834 | 9.00E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 29.772 |
| SRR1783600 | control | 29.823 |
| SRR1783602 | moderate drought stress | 18.272 |
| SRR1811619 | moderate drought stress | 18.141 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.269 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 34.059 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.206 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 23.597 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 52.785 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 52.450 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.112 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.019 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 95.502 |
| SRR2868004 | Drought Stress(Tissue:root) | 215.335 |
| SRR2967015 | Control (Tissue:root) | 224.623 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 39.916 |
| SRR9715740 | Leave | 53.850 |
| SRR9715741 | Leave | 55.730 |
| SRR9715739 | Root | 9.095 |
| SRR9715742 | Root | 56.821 |
| SRR9715743 | Root | 46.644 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.279 |
| SRR8749028 | MeJA induced 9h | 9.341 |
| SRR8749029 | MeJA induced 9h | 3.054 |
| SRR8749030 | Uninduced | 6.772 |
| SRR8749031 | Uninduced | 1.294 |
| SRR8749032 | Uninduced | 1.697 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 54.001 |
| SRR8400027 | Control-Root | 43.455 |