Gene detail information of Glyur000056s00004149.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G26250.14.00E-1603-ketoacyl-CoA synthase 10
NRXP_003547147.10PREDICTED: 3-ketoacyl-CoA synthase 10-like [Glycine max]
COGYP_003590265.12.00E-13chalcone and stilbene synthase domain-containing protein [Kyrpidia tusciae DSM 2912]
Swissprottr|Q9LLE8|KCS10_ARATH03-ketoacyl-CoA synthase 10
trEMBLtr|I1MEJ6|I1MEJ6_SOYBN03-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00056270446273058+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15397KCS EC:2.3.1.199 Fatty acid elongation map00062


Gene Ontology

biological_process

GO:0006633  fatty acid biosynthetic process

GO:0008152  metabolic process

GO:0008610  lipid biosynthetic process


cellular_component

GO:0016020  membrane


molecular_function

GO:0003824  catalytic activity

GO:0016747  transferase activity, transferring acyl groups other than amino-acyl groups

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000056s00004149.1PF08392.7FAE1_CUT1_RppA1133971.20E-116
Glyur000056s00004149.1PF08541.5ACP_syn_III_C4134921.10E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.070
SRR1783600control3.076
SRR1783602moderate drought stress10.588
SRR1811619moderate drought stress10.674

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.455
DRR006520Root Summer glycyrrhizin high producing strain5.186
DRR006521Root Winter glycyrrhizin high producing strain0.007
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain1.174
DRR006524Root Summer glycyrrhizin low producing strain1.236
DRR006525Leaf Summer glycyrrhizin high producing strain0.000
DRR006526Leaf Summer glycyrrhizin high producing strain0.000

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.756
SRR2868004Drought Stress(Tissue:root)0.864
SRR2967015Control (Tissue:root)0.604

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.433
SRR9715740Leave0.000
SRR9715741Leave0.090
SRR9715739Root1.634
SRR9715742Root1.742
SRR9715743Root2.646

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.359
SRR8749028MeJA induced 9h0.179
SRR8749029MeJA induced 9h0.283
SRR8749030Uninduced0.755
SRR8749031Uninduced0.325
SRR8749032Uninduced0.605

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.880
SRR8400027Control-Root1.033

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved