Gene detail information of Glyur000056s00004164.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60200.1 | 2.00E-26 | TARGET OF MONOPTEROS 6 |
| NR | XP_006594581.1 | 1.33E-90 | PREDICTED: dof zinc finger protein PBF-like [Glycine max] |
| Swissprot | tr|Q84TE9|DOF53_ARATH | 4.00E-35 | Dof zinc finger protein DOF5.3 |
| trEMBL | tr|I1M221|I1M221_SOYBN | 5.00E-91 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G31110.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00056 | 359792 | 360766 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-Dof |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000056s00004164.1 | PF02701.10 | zf-Dof | 38 | 98 | 1.80E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.286 |
| SRR1783600 | control | 4.127 |
| SRR1783602 | moderate drought stress | 5.474 |
| SRR1811619 | moderate drought stress | 5.778 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.336 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.482 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.800 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.916 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.532 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.428 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.922 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.836 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.739 |
| SRR2868004 | Drought Stress(Tissue:root) | 20.727 |
| SRR2967015 | Control (Tissue:root) | 19.228 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.772 |
| SRR9715740 | Leave | 0.715 |
| SRR9715741 | Leave | 1.664 |
| SRR9715739 | Root | 5.947 |
| SRR9715742 | Root | 6.629 |
| SRR9715743 | Root | 7.925 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.088 |
| SRR8400027 | Control-Root | 5.791 |