Gene detail information of Glyur000056s00004168.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G53160.2 | 6.00E-32 | squamosa promoter binding protein-like 4 |
| NR | XP_003541730.1 | 6.22E-62 | PREDICTED: squamosa promoter-binding protein 1-like isoform X1 [Glycine max] |
| Swissprot | tr|Q38741|SBP1_ANTMA | 7.00E-44 | Squamosa promoter-binding protein 1 |
| trEMBL | tr|I1M219|I1M219_SOYBN | 2.00E-62 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G31090.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00056 | 398606 | 401315 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SBP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000056s00004168.1 | PF03110.9 | SBP | 61 | 137 | 6.90E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.646 |
| SRR1783600 | control | 22.691 |
| SRR1783602 | moderate drought stress | 15.440 |
| SRR1811619 | moderate drought stress | 15.400 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.145 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.914 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.419 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.266 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.158 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.340 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 72.489 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 72.262 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.082 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.050 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 33.094 |
| SRR9715740 | Leave | 45.797 |
| SRR9715741 | Leave | 36.543 |
| SRR9715739 | Root | 1.992 |
| SRR9715742 | Root | 20.488 |
| SRR9715743 | Root | 17.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.434 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.065 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.389 |
| SRR8400027 | Control-Root | 3.405 |