Gene detail information of Glyur000056s00004173.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G33835.16.00E-31Zinc finger C-x8-C-x5-C-x3-H type family protein
NRXP_004485809.10PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Cicer arietinum]
Swissprottr|Q84VG7|FES1_ARATH9.00E-42Protein FRIGIDA-ESSENTIAL 1
trEMBLtr|K7MA73|K7MA73_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G08331.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00056424821432951-


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000056s00004173.2PF00642.19zf-CCCH3193381.90E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.828
SRR1783600control13.839
SRR1783602moderate drought stress16.279
SRR1811619moderate drought stress16.042

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.665
DRR006520Root Summer glycyrrhizin high producing strain13.359
DRR006521Root Winter glycyrrhizin high producing strain13.318
DRR006522Root Winter glycyrrhizin high producing strain12.335
DRR006523Root Summer glycyrrhizin low producing strain20.868
DRR006524Root Summer glycyrrhizin low producing strain20.706
DRR006525Leaf Summer glycyrrhizin high producing strain5.251
DRR006526Leaf Summer glycyrrhizin high producing strain5.179

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.917
SRR2868004Drought Stress(Tissue:root)15.015
SRR2967015Control (Tissue:root)13.827

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.206
SRR9715740Leave2.025
SRR9715741Leave2.549
SRR9715739Root1.385
SRR9715742Root5.375
SRR9715743Root4.796

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.221
SRR8749028MeJA induced 9h9.786
SRR8749029MeJA induced 9h6.534
SRR8749030Uninduced5.482
SRR8749031Uninduced2.530
SRR8749032Uninduced2.448

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root11.996
SRR8400027Control-Root11.876

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved