Gene detail information of Glyur000057s00008988.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G54440.10glycoside hydrolase family 2 protein
NRXP_003627849.10Beta Galactosidase-like protein [Medicago truncatula]
COGYP_943382.10beta-D-galactosidase [Psychromonas ingrahamii 37]
trEMBLtr|G7LG20|G7LG20_MEDTR0Glycoside hydrolase family 2 protein {ECO:0000313|EMBL:AET02325.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00057181243189728-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01190lacZ EC:3.2.1.23 Galactose metabolism map00052
Sphingolipid metabolismmap00600
Other glycan degradationmap00511


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


cellular_component

GO:0009341  beta-galactosidase complex


molecular_function

GO:0003824  catalytic activity

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0004565  beta-galactosidase activity

GO:0030246  carbohydrate binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000057s00008988.1PF02837.13Glyco_hydro_2_N892617.90E-51
Glyur000057s00008988.1PF00703.16Glyco_hydro_22633751.50E-12
Glyur000057s00008988.1PF02836.12Glyco_hydro_2_C4046242.70E-60
Glyur000057s00008988.1PF02929.12Bgal_small_N76110444.90E-70


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control19.795
SRR1783600control19.562
SRR1783602moderate drought stress20.335
SRR1811619moderate drought stress20.214

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.954
DRR006520Root Summer glycyrrhizin high producing strain21.667
DRR006521Root Winter glycyrrhizin high producing strain11.721
DRR006522Root Winter glycyrrhizin high producing strain11.480
DRR006523Root Summer glycyrrhizin low producing strain28.129
DRR006524Root Summer glycyrrhizin low producing strain28.020
DRR006525Leaf Summer glycyrrhizin high producing strain18.128
DRR006526Leaf Summer glycyrrhizin high producing strain17.991

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)31.925
SRR2868004Drought Stress(Tissue:root)36.514
SRR2967015Control (Tissue:root)34.410

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.596
SRR9715740Leave18.707
SRR9715741Leave23.119
SRR9715739Root5.794
SRR9715742Root28.215
SRR9715743Root25.064

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.678
SRR8749028MeJA induced 9h25.816
SRR8749029MeJA induced 9h13.699
SRR8749030Uninduced20.872
SRR8749031Uninduced7.925
SRR8749032Uninduced9.594

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.071
SRR8400027Control-Root20.370

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved