Gene detail information of Glyur000057s00008997.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G13480.10Transducin/WD40 repeat-like superfamily protein
NRXP_004511026.10PREDICTED: flowering time control protein FY-like [Cicer arietinum]
COGYP_001658758.17.00E-30WD repeat-containing protein [Microcystis aeruginosa NIES-843]
Swissprottr|Q6NLV4|FY_ARATH0Flowering time control protein FY
trEMBLtr|I1M0T4|I1M0T4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G26820.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00057250948261453-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000057s00008997.1PF00400.27WD402392710.00034
Glyur000057s00008997.1PF00400.27WD402973110.11
Glyur000057s00008997.1PF00400.27WD403193539.90E-09
Glyur000057s00008997.1PF00400.27WD403704022.80E-08
Glyur000057s00008997.1PF00400.27WD404084446.60E-08
Glyur000057s00008997.1PF00400.27WD404574877.20E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.797
SRR1783600control15.088
SRR1783602moderate drought stress17.204
SRR1811619moderate drought stress17.007

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.873
DRR006520Root Summer glycyrrhizin high producing strain14.810
DRR006521Root Winter glycyrrhizin high producing strain13.354
DRR006522Root Winter glycyrrhizin high producing strain13.131
DRR006523Root Summer glycyrrhizin low producing strain16.917
DRR006524Root Summer glycyrrhizin low producing strain16.395
DRR006525Leaf Summer glycyrrhizin high producing strain12.074
DRR006526Leaf Summer glycyrrhizin high producing strain12.017

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.709
SRR2868004Drought Stress(Tissue:root)17.537
SRR2967015Control (Tissue:root)20.230

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.463
SRR9715740Leave21.033
SRR9715741Leave19.364
SRR9715739Root8.994
SRR9715742Root16.045
SRR9715743Root14.804

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h21.400
SRR8749028MeJA induced 9h17.918
SRR8749029MeJA induced 9h18.774
SRR8749030Uninduced10.263
SRR8749031Uninduced6.633
SRR8749032Uninduced9.075

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.809
SRR8400027Control-Root18.682

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved