Gene detail information of Glyur000057s00009007.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G54470.10uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)
NRXP_003627796.10Uridine 5'-monophosphate synthase [Medicago truncatula]
COGYP_005317259.15.00E-118orotidine 5'-phosphate decarboxylase [Saprospira grandis str. Lewin]
Swissprottr|Q42586|UMPS_ARATH0Orotidine 5'-phosphate decarboxylase
trEMBLtr|Q1RU71|Q1RU71_MEDTR0Uridine 5-monophosphate synthase-like protein {ECO:0000313|EMBL:AET02272.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00057305350308586+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13421UMPS EC:2.4.2.10 4.1.1.23 Pyrimidine metabolism map00240
Drug metabolism - other enzymesmap00983


Gene Ontology

biological_process

GO:0006207  'de novo' pyrimidine nucleobase biosynthetic process

GO:0006221  pyrimidine nucleotide biosynthetic process

GO:0008152  metabolic process

GO:0009116  nucleoside metabolic process

GO:0044205  'de novo' UMP biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0004588  orotate phosphoribosyltransferase activity

GO:0004590  orotidine-5'-phosphate decarboxylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000057s00009007.1PF00156.22Pribosyltran391461.90E-09
Glyur000057s00009007.1PF00215.19OMPdecase2384702.10E-65


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.841
SRR1783600control7.253
SRR1783602moderate drought stress5.768
SRR1811619moderate drought stress5.549

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.952
DRR006520Root Summer glycyrrhizin high producing strain8.777
DRR006521Root Winter glycyrrhizin high producing strain4.348
DRR006522Root Winter glycyrrhizin high producing strain4.494
DRR006523Root Summer glycyrrhizin low producing strain5.783
DRR006524Root Summer glycyrrhizin low producing strain5.994
DRR006525Leaf Summer glycyrrhizin high producing strain8.134
DRR006526Leaf Summer glycyrrhizin high producing strain8.304

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.410
SRR2868004Drought Stress(Tissue:root)13.373
SRR2967015Control (Tissue:root)12.710

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.231
SRR9715740Leave9.171
SRR9715741Leave5.729
SRR9715739Root5.153
SRR9715742Root6.255
SRR9715743Root5.767

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.172
SRR8749028MeJA induced 9h2.685
SRR8749029MeJA induced 9h2.916
SRR8749030Uninduced2.747
SRR8749031Uninduced0.860
SRR8749032Uninduced1.249

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.290
SRR8400027Control-Root10.000

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved