Gene detail information of Glyur000057s00009008.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G61790.12.00E-132Protein with RING/U-box and TRAF-like domains
NRXP_007133775.10hypothetical protein PHAVU_011G207900g [Phaseolus vulgaris]
Swissprottr|Q8S3N1|SINA5_ARATH8.00E-167E3 ubiquitin-protein ligase SINAT5
trEMBLtr|V7AJP7|V7AJP7_PHAVU0E3 ubiquitin-protein ligase {ECO:0000256|RuleBase:RU201113}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00057309154312085-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04506SIAH1 EC:2.3.2.27 Ubiquitin mediated proteolysis map04120
MAPK signaling pathway - flymap04013
Wnt signaling pathwaymap04310
p53 signaling pathwaymap04115


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process

GO:0007275  multicellular organism development

GO:0016567  protein ubiquitination


cellular_component

GO:0005634  nucleus


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005515  protein binding

GO:0008270  zinc ion binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000057s00009008.1PF03145.11Sina982979.20E-74


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.191
SRR1783600control4.282
SRR1783602moderate drought stress4.975
SRR1811619moderate drought stress4.912

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.360
DRR006520Root Summer glycyrrhizin high producing strain19.060
DRR006521Root Winter glycyrrhizin high producing strain8.285
DRR006522Root Winter glycyrrhizin high producing strain8.145
DRR006523Root Summer glycyrrhizin low producing strain33.311
DRR006524Root Summer glycyrrhizin low producing strain33.918
DRR006525Leaf Summer glycyrrhizin high producing strain7.438
DRR006526Leaf Summer glycyrrhizin high producing strain7.393

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.597
SRR2868004Drought Stress(Tissue:root)12.013
SRR2967015Control (Tissue:root)17.746

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave20.570
SRR9715740Leave14.749
SRR9715741Leave20.700
SRR9715739Root31.806
SRR9715742Root37.411
SRR9715743Root34.065

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h33.440
SRR8749028MeJA induced 9h29.084
SRR8749029MeJA induced 9h26.219
SRR8749030Uninduced34.946
SRR8749031Uninduced15.184
SRR8749032Uninduced17.951

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.804
SRR8400027Control-Root21.093

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved