Gene detail information of Glyur000058s00006123.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G23310.12.00E-97Fe superoxide dismutase 3
NRXP_004501984.13.60E-173PREDICTED: superoxide dismutase [Fe] 3, chloroplastic-like isoform X3 [Cicer arietinum]
COGNP_682309.12.00E-48superoxide dismutase [Thermosynechococcus elongatus BP-1]
Swissprottr|Q9FMX0|SODF3_ARATH1.00E-121Superoxide dismutase [Fe] 3, chloroplastic (Precursor)
trEMBLtr|I1NE68|I1NE68_SOYBN3.00E-168Superoxide dismutase {ECO:0000256|RuleBase:RU000414}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0005868979860+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04564SOD2 EC:1.15.1.1 MAPK signaling pathway - fly map04013
FoxO signaling pathwaymap04068
Peroxisomemap04146
Longevity regulating pathway - mammalmap04211
Longevity regulating pathway - wormmap04212
Longevity regulating pathway - multiple speciesmap04213
Huntington's diseasemap05016


Gene Ontology

biological_process

GO:0006801  superoxide metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004784  superoxide dismutase activity

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000058s00006123.1PF00081.17Sod_Fe_N641329.10E-11
Glyur000058s00006123.1PF02777.13Sod_Fe_C1422554.00E-29


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.736
SRR1783600control4.800
SRR1783602moderate drought stress5.304
SRR1811619moderate drought stress5.248

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.953
DRR006520Root Summer glycyrrhizin high producing strain8.724
DRR006521Root Winter glycyrrhizin high producing strain18.248
DRR006522Root Winter glycyrrhizin high producing strain17.837
DRR006523Root Summer glycyrrhizin low producing strain6.579
DRR006524Root Summer glycyrrhizin low producing strain6.794
DRR006525Leaf Summer glycyrrhizin high producing strain12.404
DRR006526Leaf Summer glycyrrhizin high producing strain11.553

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.167
SRR2868004Drought Stress(Tissue:root)3.640
SRR2967015Control (Tissue:root)5.864

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.582
SRR9715740Leave11.094
SRR9715741Leave5.630
SRR9715739Root0.735
SRR9715742Root2.987
SRR9715743Root2.857

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.631
SRR8749028MeJA induced 9h5.277
SRR8749029MeJA induced 9h5.196
SRR8749030Uninduced1.244
SRR8749031Uninduced0.066
SRR8749032Uninduced0.355

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.831
SRR8400027Control-Root8.819

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved