Gene detail

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Gene detail information of Glyur000058s00006132.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G21105.1	0	Plant L-ascorbate oxidase
NR	XP_003555659.1	0	PREDICTED: L-ascorbate oxidase [Glycine max]
COG	YP_005329244.1	2.00E-37	Multicopper oxidase, type 3 [Blastococcus saxobsidens DD2]
Swissprot	tr\|Q40588\|ASO_TOBAC	0	L-ascorbate oxidase (Precursor)
trEMBL	tr\|I1NE62\|I1NE62_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G12220.1}

Sequence

Transcript Sequence

>Glyur000058s00006132.1
AATTTATTGGTAAAAATAGATTCTGTTTTGCTGTAAAGAAGGATTAGACTTTGAAAAAAAGAATTAGTACTTGATATATATATATTAAAACAAATTAAATAGCACGCGCAAATTGCTTGATTAATTAATATAACCCCAATGACAACTCCAGATCGAGCACGATGTGGACTGACAAAGCAACACTATATATATGTGTGTGTGTGTGCCTGCCTAGGTGCCATAATCGAGATACAACCTTGAAGCTCTCTCTCTACTAATTAATTCTTATATATATCCATATCTTTAATTTCATTGCATTTGTATAGGTCTCTTGATTTGCTTGAGTGCGCCTTGTTCCTAACTAAGACTCTAGCTCTTAGTAAAGGGCCAAAAGCTAGCATTAAGGATGATGAGCTTCAAAGCTCTTTTAATTGTTTGGTGCATATGGGTGGGGTTGTTTGAGCTATCAGTGGGAGCAAAGGTGAGGCACTACAAGTTTGATGTGGAATACATATTCAGGAAACCAGATTGCTTAGAGCATGTTGTGATGGGAATCAATGGACAGTTCCCAGGCCCAACCATCAGAGCTGAAGTTGGTGACACNCTTGACATTGCTCTCACCAACAAGCTTTCCACTGAGGGAACTGTTATTCACTGGCACGGAATCAGACAGCTTGGAACTCCTTGGGCAGATGGAACTGCTGCCATCTCACAGTGTGCTATAAACCCAGGAGAAACTTTTCATTACAGATTCAAAGTTGACAGGCCTGGTACATATTTCTATCATGGACACTATGGAATGCAGAGAGCAGCAGGGTTGTATGGTTCTCTCATAGTGGATTTACCAAAGGGACAAAGGGAGCCATTCCATTATGATGGTGAGTTCAACCTGCTCCTCAGTGATTTGTGGCACACCAGTTCACATGAACAAGAGGTTGGCCTCTCTTCGATACCACTCAAATGGATTGGTGAACCACAGACACTGCTGATCAATGGACGAGGACAGTTCAACTGTTCCCTTGCAGCTAAATTTGTGAACAACACTCTACCCCAATGCAATTTCAAAGGTGGTGAAGAATGTGCACCCCAGATTCTCCATGTGGAGCCAAAAAAGACCTATAGGATCAGAATTGCTAGTACAACTTCCTTAGCTTCTCTCAACTTGGCCATTTCGAATCACAAACTGGTTGTGGTGGAAGCTGATGGGAACTACGTGCAACCATTCGCGGTTGATGACATGGACATCTACTCAGGTGANAGCTACTCAGTGCTCCTCACCACAGACCAAGACCCAAACAAGAACTACTGGCTCTCAATTGGTGTCAGAGGCAGAAAGCCAAACACCCCACAAGGCCTAACAATCCTCAACTACAGAACAATCTCTGCCTCAGTCTTCCCAACCTCACCACCCCCAATCACTCCCCTTTGGAATGACTTCGAGCACAGCAAAGCCTTCACCAAGAAAATCATTTCCACAATGGGAACACCACAGCCACCAAGAAAGCCACCACCAGAGACATTCCCAATGGACTATGACATCTTAAACCCCCCAGTGAACGCAAACTCAACAATTGGAAATGGGGTTTACATGTTCCAGCTGAACGAGGTCGTTGATGTGATTCTACAGAATGCAAACCAGTTAACAGGAAAGGGTAGTGAGATCCACCCTTGGCATTTACATGGACATGACTTTTGGGTTTTGGGGTATGGAGAAGGGAAATTCAGACCTGGTGTTGATGAGAAGAGTTTCAACTTGACACGTGCACCATTGAGGAACACTGCAGTGATTTTCCCCTATGGTTGGACTGCATTGAGGTTTAAGGCTGATAACCCTGGTGTTTGGGCTTTCCATTGTCACATTGAGCCACATTTGCACATGGGAATGGGTGTGATTTTTGCTGAGGCTGTTCACAAAGTTGGGAAGATTCCTACTGAAGCTTTGACTTGTGGGATTACAGGGAAGATGTTCCTTGACAAGGGACACTACTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00058	70504	77338	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00423	E1.10.3.3	EC:1.10.3.3	Ascorbate and aldarate metabolism	map00053

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

cellular_component GO:0005576 extracellular region molecular_function GO:0005507 copper ion binding GO:0016491 oxidoreductase activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000058s00006132.1	PF07732.10	Cu-oxidase_3	35	147	9.00E-41
Glyur000058s00006132.1	PF00394.17	Cu-oxidase	160	323	1.40E-45
Glyur000058s00006132.1	PF07731.9	Cu-oxidase_2	377	500	6.60E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	154.106
SRR1783600	control	154.457
SRR1783602	moderate drought stress	61.042
SRR1811619	moderate drought stress	61.140

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	61.880
DRR006520	Root Summer glycyrrhizin high producing strain	61.347
DRR006521	Root Winter glycyrrhizin high producing strain	0.403
DRR006522	Root Winter glycyrrhizin high producing strain	0.395
DRR006523	Root Summer glycyrrhizin low producing strain	127.398
DRR006524	Root Summer glycyrrhizin low producing strain	127.578
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.158
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.122

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	231.326
SRR2868004	Drought Stress(Tissue:root)	113.299
SRR2967015	Control (Tissue:root)	95.911

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	52.265
SRR9715740	Leave	46.309
SRR9715741	Leave	47.925
SRR9715739	Root	53.329
SRR9715742	Root	61.254
SRR9715743	Root	58.148

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.791
SRR8749028	MeJA induced 9h	21.269
SRR8749029	MeJA induced 9h	13.518
SRR8749030	Uninduced	2.295
SRR8749031	Uninduced	0.276
SRR8749032	Uninduced	0.180

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	44.865
SRR8400027	Control-Root	55.178