Gene detail information of Glyur000058s00006152.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G48160.2 | 2.00E-103 | DP-E2F-like 1 |
| NR | XP_003527038.1 | 0 | PREDICTED: E2F transcription factor-like E2FE-like isoform X1 [Glycine max] |
| Swissprot | tr|Q8LSZ4|E2FE_ARATH | 3.00E-126 | E2F transcription factor-like E2FE |
| trEMBL | tr|V7CB15|V7CB15_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW27377.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00058 | 177942 | 181020 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | E2F-DP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000058s00006152.1 | PF02319.15 | E2F_TDP | 16 | 81 | 2.60E-21 |
| Glyur000058s00006152.1 | PF02319.15 | E2F_TDP | 152 | 232 | 4.30E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.877 |
| SRR1783600 | control | 3.923 |
| SRR1783602 | moderate drought stress | 2.224 |
| SRR1811619 | moderate drought stress | 2.306 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.080 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.010 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.596 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.516 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.102 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.167 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.599 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.771 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.949 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.881 |
| SRR2967015 | Control (Tissue:root) | 8.581 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.126 |
| SRR9715740 | Leave | 4.314 |
| SRR9715741 | Leave | 3.446 |
| SRR9715739 | Root | 0.532 |
| SRR9715742 | Root | 1.377 |
| SRR9715743 | Root | 1.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.655 |
| SRR8749028 | MeJA induced 9h | 23.546 |
| SRR8749029 | MeJA induced 9h | 13.331 |
| SRR8749030 | Uninduced | 16.599 |
| SRR8749031 | Uninduced | 17.081 |
| SRR8749032 | Uninduced | 8.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.504 |
| SRR8400027 | Control-Root | 7.428 |