Gene detail information of Glyur000058s00006177.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G28880.1 | 2.00E-10 | para-aminobenzoate (PABA) synthase family protein |
| NR | XP_007143697.1 | 2.10E-24 | hypothetical protein PHAVU_007G094100g [Phaseolus vulgaris] |
| Swissprot | tr|Q6TAS3|ADCS_SOLLC | 6.00E-13 | Aminodeoxychorismate synthase, chloroplastic (Precursor) |
| trEMBL | tr|V7BGW1|V7BGW1_PHAVU | 8.00E-25 | Uncharacterized protein {ECO:0000313|EMBL:ESW15691.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00058 | 287554 | 297862 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13950 | pabAB | EC:2.6.1.85 | Folate biosynthesis | map00790 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.202 |
| SRR1783600 | control | 2.028 |
| SRR1783602 | moderate drought stress | 2.602 |
| SRR1811619 | moderate drought stress | 2.517 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.672 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.725 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.992 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.042 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.163 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.296 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.752 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.485 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.102 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.907 |
| SRR2967015 | Control (Tissue:root) | 8.024 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.559 |
| SRR9715740 | Leave | 3.967 |
| SRR9715741 | Leave | 5.205 |
| SRR9715739 | Root | 1.523 |
| SRR9715742 | Root | 2.803 |
| SRR9715743 | Root | 1.470 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.957 |
| SRR8749028 | MeJA induced 9h | 3.188 |
| SRR8749029 | MeJA induced 9h | 0.844 |
| SRR8749030 | Uninduced | 1.432 |
| SRR8749031 | Uninduced | 1.574 |
| SRR8749032 | Uninduced | 0.801 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.412 |
| SRR8400027 | Control-Root | 7.331 |