Gene detail information of Glyur000058s00006191.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G26580.2 | 2.00E-61 | plant-specific transcription factor YABBY family protein |
| NR | XP_003542627.1 | 9.39E-110 | PREDICTED: axial regulator YABBY 5-like [Glycine max] |
| Swissprot | tr|Q8GW46|YAB5_ARATH | 3.00E-77 | Axial regulator YABBY 5 |
| trEMBL | tr|I1LZN8|I1LZN8_SOYBN | 4.00E-110 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G22620.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00058 | 405050 | 409035 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-YABBY |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000058s00006191.1 | PF04690.8 | YABBY | 7 | 67 | 8.50E-22 |
| Glyur000058s00006191.1 | PF04690.8 | YABBY | 91 | 147 | 3.90E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.260 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 21.665 |
| SRR9715740 | Leave | 16.294 |
| SRR9715741 | Leave | 21.314 |
| SRR9715739 | Root | 0.186 |
| SRR9715742 | Root | 0.193 |
| SRR9715743 | Root | 0.132 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.000 |
| SRR8400027 | Control-Root | 0.187 |