Gene detail information of Glyur000058s00006197.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G26600.1 | 1.00E-147 | Glycosyl hydrolase superfamily protein |
| NR | XP_007155020.1 | 0 | hypothetical protein PHAVU_003G166400g [Phaseolus vulgaris] |
| Swissprot | tr|Q9ZQG9|E1314_ARATH | 8.00E-102 | Glucan endo-1,3-beta-glucosidase 14 (Precursor) |
| trEMBL | tr|V7CA30|V7CA30_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW27014.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00058 | 441186 | 445229 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH17 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000058s00006197.1 | PF00332.13 | Glyco_hydro_17 | 50 | 368 | 1.70E-91 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 37.734 |
| SRR1783600 | control | 39.013 |
| SRR1783602 | moderate drought stress | 29.183 |
| SRR1811619 | moderate drought stress | 29.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 50.804 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 50.127 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 67.100 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 65.009 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 90.557 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 90.282 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.979 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.104 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 22.556 |
| SRR2868004 | Drought Stress(Tissue:root) | 20.424 |
| SRR2967015 | Control (Tissue:root) | 25.164 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 23.490 |
| SRR9715740 | Leave | 26.120 |
| SRR9715741 | Leave | 28.420 |
| SRR9715739 | Root | 15.306 |
| SRR9715742 | Root | 56.255 |
| SRR9715743 | Root | 48.101 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.143 |
| SRR8749028 | MeJA induced 9h | 10.313 |
| SRR8749029 | MeJA induced 9h | 10.916 |
| SRR8749030 | Uninduced | 5.533 |
| SRR8749031 | Uninduced | 1.428 |
| SRR8749032 | Uninduced | 4.354 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 23.507 |
| SRR8400027 | Control-Root | 23.340 |