Gene detail information of Glyur000059s00006301.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G20550.1 | 6.00E-174 | O-fucosyltransferase family protein |
| NR | XP_004491638.1 | 0 | PREDICTED: uncharacterized protein At1g04910-like [Cicer arietinum] |
| Swissprot | tr|Q8W486|Y1491_ARATH | 1.00E-77 | Uncharacterized protein At1g04910 |
| trEMBL | tr|G7KFE4|G7KFE4_MEDTR | 0 | GDP-fucose O-fucosyltransferase-like protein {ECO:0000313|EMBL:AET01061.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00059 | 194172 | 198691 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000059s00006301.1 | PF10250.4 | O-FucT | 122 | 435 | 3.80E-86 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.044 |
| SRR1811619 | moderate drought stress | 0.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.062 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.061 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.064 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.057 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.062 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.063 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.250 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.316 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.308 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.618 |
| SRR2967015 | Control (Tissue:root) | 0.438 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.073 |
| SRR9715740 | Leave | 0.036 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.036 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.969 |
| SRR8749028 | MeJA induced 9h | 0.717 |
| SRR8749029 | MeJA induced 9h | 0.230 |
| SRR8749030 | Uninduced | 1.103 |
| SRR8749031 | Uninduced | 6.251 |
| SRR8749032 | Uninduced | 3.491 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.180 |
| SRR8400027 | Control-Root | 0.234 |