Gene detail information of Glyur000059s00006306.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G15130.1 | 7.00E-95 | phosphorylcholine cytidylyltransferase2 |
| NR | NP_001242526.1 | 3.43E-145 | uncharacterized protein LOC100807840 [Glycine max] |
| COG | YP_004672440.1 | 8.00E-10 | hypothetical protein SNE_A20720 [Simkania negevensis Z] |
| Swissprot | tr|F4JJE0|CCT2_ARATH | 2.00E-117 | Choline-phosphate cytidylyltransferase 2 |
| trEMBL | tr|C6T863|C6T863_SOYBN | 1.00E-145 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU18015.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00059 | 235613 | 239296 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00968 | PCYT1 | EC:2.7.7.15 | Glycerophospholipid metabolism | map00564 |
| Phosphonate and phosphinate metabolism | map00440 | |||
| Choline metabolism in cancer | map05231 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000059s00006306.1 | PF01467.21 | CTP_transf_2 | 17 | 82 | 6.20E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 70.068 |
| SRR1783600 | control | 70.095 |
| SRR1783602 | moderate drought stress | 86.068 |
| SRR1811619 | moderate drought stress | 85.733 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 73.117 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 72.751 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 58.620 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 57.315 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 68.231 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 68.757 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 48.842 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 48.705 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 64.065 |
| SRR2868004 | Drought Stress(Tissue:root) | 61.322 |
| SRR2967015 | Control (Tissue:root) | 64.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 42.140 |
| SRR9715740 | Leave | 61.107 |
| SRR9715741 | Leave | 47.636 |
| SRR9715739 | Root | 21.827 |
| SRR9715742 | Root | 43.226 |
| SRR9715743 | Root | 43.199 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 67.726 |
| SRR8749028 | MeJA induced 9h | 43.829 |
| SRR8749029 | MeJA induced 9h | 56.797 |
| SRR8749030 | Uninduced | 32.641 |
| SRR8749031 | Uninduced | 32.413 |
| SRR8749032 | Uninduced | 26.814 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 59.955 |
| SRR8400027 | Control-Root | 61.651 |