Gene detail information of Glyur000059s00006313.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G03475.11.00E-175Coproporphyrinogen III oxidase
NRP35055.10RecName: Full=Oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic; Short=Coprogen oxidase; Short=Coproporphyrinogenase; Flags: Precursor [Glycine max]
COGYP_003582666.19.00E-112coproporphyrinogen III oxidase [Zunongwangia profunda SM-A87]
Swissprottr|P35055|HEM6_SOYBN0Oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic (Precursor)
trEMBLtr|I3SZR7|I3SZR7_LOTJA0Uncharacterized protein {ECO:0000313|EMBL:AFK45759.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00059266202269784-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00228CPOX, hemF EC:1.3.3.3 Porphyrin and chlorophyll metabolism map00860


Gene Ontology

biological_process

GO:0006779  porphyrin-containing compound biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004109  coproporphyrinogen oxidase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000059s00006313.1PF01218.13Coprogen_oxidas933985.90E-130


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control24.425
SRR1783600control23.927
SRR1783602moderate drought stress22.548
SRR1811619moderate drought stress22.417

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain27.947
DRR006520Root Summer glycyrrhizin high producing strain27.488
DRR006521Root Winter glycyrrhizin high producing strain17.832
DRR006522Root Winter glycyrrhizin high producing strain16.447
DRR006523Root Summer glycyrrhizin low producing strain27.435
DRR006524Root Summer glycyrrhizin low producing strain25.930
DRR006525Leaf Summer glycyrrhizin high producing strain97.477
DRR006526Leaf Summer glycyrrhizin high producing strain96.564

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)28.697
SRR2868004Drought Stress(Tissue:root)20.828
SRR2967015Control (Tissue:root)23.692

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave45.915
SRR9715740Leave43.965
SRR9715741Leave29.456
SRR9715739Root19.959
SRR9715742Root18.674
SRR9715743Root15.677

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h75.784
SRR8749028MeJA induced 9h101.209
SRR8749029MeJA induced 9h139.218
SRR8749030Uninduced104.006
SRR8749031Uninduced114.456
SRR8749032Uninduced125.015

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root33.183
SRR8400027Control-Root33.436

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved