Gene detail information of Glyur000059s00006316.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G37040.10PHE ammonia lyase 1
NRXP_004491627.10PREDICTED: phenylalanine ammonia-lyase class 3-like [Cicer arietinum]
COGYP_007127054.11.00E-81histidine ammonia-lyase [Gloeocapsa sp. PCC 7428]
Swissprottr|P19143|PAL3_PHAVU0Phenylalanine ammonia-lyase class 3
trEMBLtr|G7K0Q0|G7K0Q0_MEDTR0Phenylalanine ammonia-lyase {ECO:0000256|RuleBase:RU003955}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00059282630285264-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10775PAL EC:4.3.1.24 Phenylalanine metabolism map00360
Phenylpropanoid biosynthesismap00940


Gene Ontology

biological_process

GO:0006559  L-phenylalanine catabolic process

GO:0009058  biosynthetic process


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0003824  catalytic activity

GO:0016841  ammonia-lyase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000059s00006316.1PF00221.14Lyase_aromatic585451.00E-165


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.441
SRR1783600control3.445
SRR1783602moderate drought stress3.529
SRR1811619moderate drought stress3.446

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.724
DRR006520Root Summer glycyrrhizin high producing strain0.673
DRR006521Root Winter glycyrrhizin high producing strain0.047
DRR006522Root Winter glycyrrhizin high producing strain0.045
DRR006523Root Summer glycyrrhizin low producing strain1.105
DRR006524Root Summer glycyrrhizin low producing strain1.139
DRR006525Leaf Summer glycyrrhizin high producing strain4.307
DRR006526Leaf Summer glycyrrhizin high producing strain4.197

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)38.938
SRR2868004Drought Stress(Tissue:root)84.839
SRR2967015Control (Tissue:root)77.180

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.355
SRR9715740Leave5.555
SRR9715741Leave20.986
SRR9715739Root4.226
SRR9715742Root14.686
SRR9715743Root12.030

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.917
SRR8749028MeJA induced 9h2.614
SRR8749029MeJA induced 9h1.008
SRR8749030Uninduced81.776
SRR8749031Uninduced28.647
SRR8749032Uninduced5.520

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root37.325
SRR8400027Control-Root22.729

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved