Gene detail information of Glyur000059s00006320.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G57820.10Zinc finger (C3HC4-type RING finger) family protein
NRXP_004491625.10PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 2-like [Cicer arietinum]
COGNP_295256.17.00E-29hypothetical protein DR_1533 [Deinococcus radiodurans R1]
Swissprottr|Q8VYZ0|ORTH2_ARATH0E3 ubiquitin-protein ligase ORTHRUS 2
trEMBLtr|G7L7G5|G7L7G5_MEDTR0E3 ubiquitin-protein ligase orthrus-like protein {ECO:0000313|EMBL:AET05198.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00059301775305286+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0042393  histone binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000059s00006320.1PF00097.20zf-C3HC41351737.70E-08
Glyur000059s00006320.1PF02182.12SAD_SRA2614161.00E-53
Glyur000059s00006320.1PF00097.20zf-C3HC45075649.70E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.622
SRR1783600control16.658
SRR1783602moderate drought stress8.413
SRR1811619moderate drought stress8.295

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.677
DRR006520Root Summer glycyrrhizin high producing strain7.570
DRR006521Root Winter glycyrrhizin high producing strain0.358
DRR006522Root Winter glycyrrhizin high producing strain0.303
DRR006523Root Summer glycyrrhizin low producing strain4.027
DRR006524Root Summer glycyrrhizin low producing strain4.071
DRR006525Leaf Summer glycyrrhizin high producing strain0.633
DRR006526Leaf Summer glycyrrhizin high producing strain0.634

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)27.040
SRR2868004Drought Stress(Tissue:root)15.867
SRR2967015Control (Tissue:root)19.746

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.405
SRR9715740Leave0.203
SRR9715741Leave0.913
SRR9715739Root4.905
SRR9715742Root6.195
SRR9715743Root5.933

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h188.157
SRR8749028MeJA induced 9h80.874
SRR8749029MeJA induced 9h54.371
SRR8749030Uninduced11.002
SRR8749031Uninduced4.140
SRR8749032Uninduced7.007

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root31.909
SRR8400027Control-Root26.144

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved