Gene detail information of Glyur000059s00006338.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G11710.10lysyl-tRNA synthetase 1
NRXP_006588836.10PREDICTED: lysine--tRNA ligase-like isoform X1 [Glycine max]
COGYP_003824578.11.00E-139lysyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
Swissprottr|Q9ZPI1|SYK_ARATH0Lysine--tRNA ligase
trEMBLtr|I1L9B1|I1L9B1_SOYBN0Lysine--tRNA ligase {ECO:0000256|RuleBase:RU003748}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00059426716435963+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04567KARS, lysS EC:6.1.1.6 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006430  lysyl-tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0003676  nucleic acid binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004824  lysine-tRNA ligase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000059s00006338.2PF01336.20tRNA_anti-codon1191951.70E-12
Glyur000059s00006338.2PF00152.15tRNA-synt_22414327.50E-47
Glyur000059s00006338.2PF00152.15tRNA-synt_24705493.50E-24


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control34.768
SRR1783600control35.374
SRR1783602moderate drought stress36.350
SRR1811619moderate drought stress36.517

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain58.474
DRR006520Root Summer glycyrrhizin high producing strain57.237
DRR006521Root Winter glycyrrhizin high producing strain26.396
DRR006522Root Winter glycyrrhizin high producing strain26.234
DRR006523Root Summer glycyrrhizin low producing strain56.435
DRR006524Root Summer glycyrrhizin low producing strain55.968
DRR006525Leaf Summer glycyrrhizin high producing strain30.498
DRR006526Leaf Summer glycyrrhizin high producing strain31.320

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)97.079
SRR2868004Drought Stress(Tissue:root)78.506
SRR2967015Control (Tissue:root)73.131

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave47.186
SRR9715740Leave43.655
SRR9715741Leave48.228
SRR9715739Root9.723
SRR9715742Root51.358
SRR9715743Root45.994

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h156.585
SRR8749028MeJA induced 9h101.771
SRR8749029MeJA induced 9h120.345
SRR8749030Uninduced41.956
SRR8749031Uninduced53.309
SRR8749032Uninduced57.577

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root74.080
SRR8400027Control-Root61.900

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved