Gene detail information of Glyur000060s00004723.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G60930.16.00E-73RECQ helicase L4B
NRKHN18629.10Werner syndrome ATP-dependent helicase like [Glycine soja]
COGYP_007118665.12.00E-126ATP-dependent DNA helicase RecQ [Oscillatoria nigro-viridis PCC 7112]
Swissprottr|Q9FT70|RQL4B_ARATH8.00E-78ATP-dependent DNA helicase Q-like 4B
trEMBLtr|K7MQ01|K7MQ01_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G05562.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00060100879109248-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03654recQ EC:3.6.4.12 RNA degradation map03018


Gene Ontology

biological_process

GO:0006260  DNA replication

GO:0006281  DNA repair

GO:0006310  DNA recombination

GO:0044237  cellular metabolic process


cellular_component

GO:0005622  intracellular


molecular_function

GO:0000166  nucleotide binding

GO:0003676  nucleic acid binding

GO:0003824  catalytic activity

GO:0005524  ATP binding

GO:0008026  ATP-dependent helicase activity

GO:0043140  ATP-dependent 3'-5' DNA helicase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000060s00004723.1PF00270.24DEAD461665.80E-10
Glyur000060s00004723.1PF00271.26Helicase_C2383142.20E-18
Glyur000060s00004723.1PF09382.5RQC3884826.10E-22
Glyur000060s00004723.1PF00570.18HRDC5275935.10E-15
Glyur000060s00004723.1PF14493.1HTH_406327311.70E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.647
SRR1783600control1.699
SRR1783602moderate drought stress1.238
SRR1811619moderate drought stress1.251

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.241
DRR006520Root Summer glycyrrhizin high producing strain2.134
DRR006521Root Winter glycyrrhizin high producing strain1.254
DRR006522Root Winter glycyrrhizin high producing strain1.162
DRR006523Root Summer glycyrrhizin low producing strain1.748
DRR006524Root Summer glycyrrhizin low producing strain1.904
DRR006525Leaf Summer glycyrrhizin high producing strain1.217
DRR006526Leaf Summer glycyrrhizin high producing strain1.244

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.339
SRR2868004Drought Stress(Tissue:root)3.174
SRR2967015Control (Tissue:root)2.885

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.346
SRR9715740Leave0.598
SRR9715741Leave1.534
SRR9715739Root0.017
SRR9715742Root0.813
SRR9715743Root0.398

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.393
SRR8749028MeJA induced 9h11.847
SRR8749029MeJA induced 9h8.323
SRR8749030Uninduced0.632
SRR8749031Uninduced0.432
SRR8749032Uninduced0.944

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.518
SRR8400027Control-Root3.898

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved