Gene detail information of Glyur000060s00004732.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G61460.13.00E-43brassinosteroid-responsive RING-H2
NRXP_007135103.12.10E-87hypothetical protein PHAVU_010G101100g [Phaseolus vulgaris]
Swissprottr|Q9SUS5|RHA1B_ARATH1.00E-24E3 ubiquitin-protein ligase RHA1B
trEMBLtr|V7AN55|V7AN55_PHAVU8.00E-88Uncharacterized protein {ECO:0000313|EMBL:ESW07097.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00060167246167767+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000060s00004732.1PF13639.1zf-RING_2951383.80E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control56.718
SRR1783600control54.913
SRR1783602moderate drought stress68.475
SRR1811619moderate drought stress67.487

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain64.965
DRR006520Root Summer glycyrrhizin high producing strain62.850
DRR006521Root Winter glycyrrhizin high producing strain8.836
DRR006522Root Winter glycyrrhizin high producing strain9.694
DRR006523Root Summer glycyrrhizin low producing strain34.591
DRR006524Root Summer glycyrrhizin low producing strain32.997
DRR006525Leaf Summer glycyrrhizin high producing strain4.411
DRR006526Leaf Summer glycyrrhizin high producing strain6.094

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.335
SRR2868004Drought Stress(Tissue:root)23.470
SRR2967015Control (Tissue:root)16.783

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.590
SRR9715740Leave1.290
SRR9715741Leave1.826
SRR9715739Root30.266
SRR9715742Root16.089
SRR9715743Root18.532

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h68.523
SRR8749028MeJA induced 9h142.681
SRR8749029MeJA induced 9h72.319
SRR8749030Uninduced38.845
SRR8749031Uninduced17.194
SRR8749032Uninduced62.169

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.100
SRR8400027Control-Root25.437

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved