Gene detail information of Glyur000060s00004740.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G00335.2 | 7.00E-40 | RING-H2 finger B1A |
| NR | KHN46721.1 | 3.10E-97 | E3 ubiquitin-protein ligase [Glycine soja] |
| Swissprot | tr|Q8LE94|RING3_ARATH | 2.00E-22 | E3 ubiquitin-protein ligase At3g02290 |
| trEMBL | tr|I1KI83|I1KI83_SOYBN | 2.00E-95 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G07500.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00060 | 207135 | 208609 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000060s00004740.1 | PF13639.1 | zf-RING_2 | 125 | 167 | 1.10E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.957 |
| SRR1783600 | control | 11.473 |
| SRR1783602 | moderate drought stress | 9.055 |
| SRR1811619 | moderate drought stress | 8.858 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.205 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.379 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.199 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.879 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.140 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 28.704 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.698 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.485 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 18.846 |
| SRR2868004 | Drought Stress(Tissue:root) | 20.939 |
| SRR2967015 | Control (Tissue:root) | 24.826 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 19.508 |
| SRR9715740 | Leave | 22.521 |
| SRR9715741 | Leave | 30.651 |
| SRR9715739 | Root | 3.113 |
| SRR9715742 | Root | 8.061 |
| SRR9715743 | Root | 8.697 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.214 |
| SRR8749028 | MeJA induced 9h | 12.546 |
| SRR8749029 | MeJA induced 9h | 14.543 |
| SRR8749030 | Uninduced | 20.904 |
| SRR8749031 | Uninduced | 15.603 |
| SRR8749032 | Uninduced | 15.312 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 17.756 |
| SRR8400027 | Control-Root | 17.222 |