Gene detail

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Gene detail information of Glyur000060s00004741.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G00340.1	0	receptor-like protein kinase 4
NR	XP_004510769.1	0	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2-like [Cicer arietinum]
COG	YP_001958461.1	1.00E-24	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q39203\|SD22_ARATH	0	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 (Precursor)
trEMBL	tr\|G7LBP9\|G7LBP9_MEDTR	0	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}

Sequence

Transcript Sequence

>Glyur000060s00004741.1
ATGCAGGGAGGGAGGAGCAATACTATGTTGGAAGTTGGAACATCCTCTTCCCATTTTCCCTTCTTCCCTTCCCTCCGACAACCTCAACCTCAACAACAACTATCCTATTCCCGTGAAGAACAACAACAACTACTAACAATGTCAATGTCACTACTCCTTTTGTTTTCCTTTCTTCTGTCTCACCTCATTACTCCCATTGCTGCTTCTGCTTCTCCCACCCCACTCAACAACAACAACAACAACAACAACAACCACTCCTCCACCGTTGTTGTTATAACAGGAAACACAACCCTTCTGAGCCAGAACCGAACCTTCGAGCTTGGCTTCTTCAACTTGGAACAACAACCCCGCTGGTACCTCGCTATCCGCTTCACTTCCCTCCCATCCCCAAACATCATCTGGCTCGCTAACCGCCACAATCCAACCCCATCACTCTCCGGTTCAACCCTCCAACTCACCCCAACCGGCCAATTACTCCTCACTCACCCATCATCATCATCAACCCTCTGGCAAACCAACAACACACAGGGTCAGGGTCACGGTGTGACGACTCCGAAGCTTCTAGAGAACGGCAACTTGGTTCTCCTCTCCCTTGACGGCGTCGTTTTATGGCAGAGCTTCGACGACCCCACCGACACGTGGCTCCCCGGCATGAACCTCACCCGCTTCCGCTCCCTTCTCTCTTGGCGTACCCCGACGGACCCTTCCCCTGGTTTTTATTCCCTGCGGTTGAAACCCCCCGACTACGGTGAATTCGAGCTCGTCTTCAACNGCACCGTTTCGTACTGGTCCACCGGGAACTGGACTGGCGGGTCGTTCCTCAACGTCCCCGAGATGACCATCCCTTACATTTACCGGTTCGATTTTGAGGACCCCTTCACCCCGACGGCGTCGTTTGGGTTCTCCGAGAGAACCCTCGACAACGGCCTCAGGCCTCCCACCATGTTCCGCGTGGAGCCCTTCGGGCAGGTTCGGCAGTACACGTGGTCCAACCAGGCAGGTTCNTGGAACATGTTCTGGTCCAGACCCGACGGGGTGTGTCAGGTTCGGGGCCTCTGCGGGAGCTTCGGCGTCTGCACCGGCGACATGTCGTCGAGGCTCTGCGAGTGCGTCAGGGGTTTCGAGCCCGTCGACGGTGCTGGGTGGGGTTCCGGTGACTATTCCCAGGGCTGCCGCCGCCGGGGAAGGGCGTGTGGTGGTAAGAGTGACGGTTTTGAAGATCTGGGTGCTGTGAGGTTTGGTGGGGCTAATAATGTTAGTTATTTTAAAACCAAATCTAGAAGCTACTGTGAGCGTGAGTGTTTGGGTTCCTGCGATTGTGTTGCCTTGTCTTTCGATGGAGGGAGTGGTGTGTGCAGGAATTTCCATGGGTCTCTTTTGGATTTTCAGAATTTGACTGCTTTGGAGAGTAGTGGTGGTGATGATGATGATGTGTTGTATGTTAGGGTTCCTGGAGGGNGATCTGTTGGGAAGGGGCTTAATGGTAGGGTTTTGAGTGGTGTTGTTATTGGGTCTGTTGCGGTTTTGGGTTTGGTGGTGGTGACTTTGGTGGTGTTGGTGAAGAGGATGGGATTGAAGAAGAAGACGGGGTTGGGGTTGGGGTTGGACGAAGATGGGTTTGTTGTTCCTGTGTTGAATTTGAAGGTGTTTTCTTACAAAGAGCTTCAGTTGGCCACTCGAGGGTTTTCTGATAAGGTAGGGCATGGTGGGTTTGGAACCGTGTTTCAAGGGGAGTTGAGTGATGATTCTACTCTTGTTGCTGTGAAGCGCTTAGAGAGGCCGGGTGGTGGGGAGAAAGAGTTCAGGGCAGAGGTGTCCACAATTGGGAACATTCAGCATGTTAATCTCGTGAGGCTCAGAGGGTTTTGCTCTGAGAATTCTCATAGGCTTTTGGTTTATGAGTACATGCAGAATGGTGCCCTGAGTGCTTACCTGCGGAAGGAGGGGCCGTGTTTGGGCTGGGATGTTAGGTTCCGGGTGGCGATTGGGACGGCTAAAGGAATAGCGTATTTACATGAGGAGTGTAGGTCTTGCATTATACACTGTGATATCAAACCTGAAAACATCCTTCTGGATGGTGATTTCACTGCCAAAGTTTCCGATTTTGGATTGGCCAAGCTAATTGGAAGGGACTTCAGTCGGGTGTTGGCAACCATGAGGGGTACATGGGGATATGTAGCTCCGGAGTGGATTTCCGGTGTGGCAATTACCACCAAAGCCGATGTTTACAGCTATGGGATGACGTTACTGGAACTCATTGGCGGTCGCCGGAATGTGGAGGCACCGCCGTCTGCTGGTGGTGGTAGGGATAGTGGTTGTGAGACAGGAGAGAAGTGGTTCTTTCCTCCATGGGCTGCGCAGCAGATAATCGAGGGAAATTTGGATGCTGTGGTTGATAAGAAGCTTGGGAATGTATACAACTTTGAGGAGGCTAGGAGGGTTGCTTTGGTGGCAGTTTGGTGCATTCAGGATGATGAGGCAATGAGACCTACTATGGNTATGGTGGTGAAAATGTTAGAGGGGTTAGTGGAGGTGGCTGTTCCTCCGCCGCCTAAGTTGCTGCAAGCATTGGTTACCGGAGAGTCCTTTCATGGGGTCAAGGCTGATTCTAGCAATGGGGTATCCACTCTTAGCAGCTTATCTGGTGACAACTTGGAAGTGTCAGCTGCTGATTCAGAATCATGTATAGGGGATGTTTTTTCCCCTATGGATGCCAAAGTCAATGTTCGATAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00060	220532	223264	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0048544 recognition of pollen

molecular_function GO:0004672 protein kinase activity GO:0004674 protein serine/threonine kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000060s00004741.1	PF01453.19	B_lectin	131	236	2.20E-24
Glyur000060s00004741.1	PF00954.15	S_locus_glycop	263	376	1.70E-18
Glyur000060s00004741.1	PF08276.6	PAN_2	398	461	5.20E-05
Glyur000060s00004741.1	PF00069.20	Pkinase	564	836	6.60E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.771
SRR1783600	control	12.751
SRR1783602	moderate drought stress	24.114
SRR1811619	moderate drought stress	24.224

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.504
DRR006520	Root Summer glycyrrhizin high producing strain	19.436
DRR006521	Root Winter glycyrrhizin high producing strain	4.838
DRR006522	Root Winter glycyrrhizin high producing strain	4.798
DRR006523	Root Summer glycyrrhizin low producing strain	9.820
DRR006524	Root Summer glycyrrhizin low producing strain	9.975
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.962
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.855

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	20.419
SRR2868004	Drought Stress(Tissue:root)	18.208
SRR2967015	Control (Tissue:root)	20.808

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	4.628
SRR9715740	Leave	4.186
SRR9715741	Leave	3.766
SRR9715739	Root	23.450
SRR9715742	Root	12.460
SRR9715743	Root	13.713

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.778
SRR8749028	MeJA induced 9h	9.691
SRR8749029	MeJA induced 9h	3.523
SRR8749030	Uninduced	5.464
SRR8749031	Uninduced	2.853
SRR8749032	Uninduced	3.288

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	17.756
SRR8400027	Control-Root	18.691